normative model
Compact task representations as a normative model for higher-order brain activity: Supplementary material
Figure 1A illustrates this trade-off for a single represented history. We note that dynamics amplifying the input will in general also amplify the noise. Trade-offs in a noisy, constrained LDS. All three vectors are assumed to have unit length. The increased precision is thus enabled by discarding irrelevant information.
Idiosyncratic Versus Normative Modeling of Atypical Speech Recognition: Dysarthric Case Studies
Raja, Vishnu, Ganesan, Adithya V, Syamkumar, Anand, Banerjee, Ritwik, Schwartz, H Andrew
State-of-the-art automatic speech recognition (ASR) models like Whisper, perform poorly on atypical speech, such as that produced by individuals with dysarthria. Past works for atypical speech have mostly investigated fully personalized (or idiosyncratic) models, but modeling strategies that can both generalize and handle idiosyncracy could be more effective for capturing atypical speech. To investigate this, we compare four strategies: (a) $\textit{normative}$ models trained on typical speech (no personalization), (b) $\textit{idiosyncratic}$ models completely personalized to individuals, (c) $\textit{dysarthric-normative}$ models trained on other dysarthric speakers, and (d) $\textit{dysarthric-idiosyncratic}$ models which combine strategies by first modeling normative patterns before adapting to individual speech. In this case study, we find the dysarthric-idiosyncratic model performs better than idiosyncratic approach while requiring less than half as much personalized data (36.43 WER with 128 train size vs 36.99 with 256). Further, we found that tuning the speech encoder alone (as opposed to the LM decoder) yielded the best results reducing word error rate from 71% to 32% on average. Our findings highlight the value of leveraging both normative (cross-speaker) and idiosyncratic (speaker-specific) patterns to improve ASR for underrepresented speech populations.
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Review for NeurIPS paper: Compact task representations as a normative model for higher-order brain activity
This is a nice contribution in that it combines several different approaches (efficient coding, neuroscience/neural modeling, MDPs) in a conceptually novel way (R1, R4, R5), with R4 commenting that it's likely to be of great impact to the wider community. On the other hand, R3 saw limited conceptual novelty and believes that some prior work on policy compression has been understated. In general, I'm inclined to agree with other reviewers that it's fairly well-positioned with regard to prior work (R1). R4 praised the clarity of the writing, and other reviewers didn't have any issues with the presentation. R5 expressed concern that the results are mainly qualitative, and not particularly novel, despite the novelty of the approach itself.
Review for NeurIPS paper: Compact task representations as a normative model for higher-order brain activity
Weaknesses: One main problem is that the paper does not contain a plausible method for learning. Not only would this likely be extremely hard (for the informational measures), but there could also be a complex interaction between things like compression, exploration and learning. Although it is certainly interesting to think about the difference between model-based and model-free representations, I wasn't completely convinced by the arguments in the paper. If I understand correctly, the habitual agent would have a partly open-loop character to it (ie it would ignore parts of the observation) - this is dangerous in anything but a completely stationary world; and since animals seem to continue to possess their model-based methods even after control has become habitized, it would also seem that the suggestion would be that animals would maintain two separate representations, one MB and the other MF, which seems wasteful. The experiments could also have been more convincing.
Compact task representations as a normative model for higher-order brain activity
Higher-order brain areas such as the frontal cortices are considered essential for the flexible solution of tasks. However, the precise computational role of these areas is still debated. Indeed, even for the simplest of tasks, we cannot really explain how the measured brain activity, which evolves over time in complicated ways, relates to the task structure. Here, we follow a normative approach, based on integrating the principle of efficient coding with the framework of Markov decision processes (MDP). More specifically, we focus on MDPs whose state is based on action-observation histories, and we show how to compress the state space such that unnecessary redundancy is eliminated, while task-relevant information is preserved.
To which reference class do you belong? Measuring racial fairness of reference classes with normative modeling
Rutherford, Saige, Wolfers, Thomas, Fraza, Charlotte, Harrnet, Nathaniel G., Beckmann, Christian F., Ruhe, Henricus G., Marquand, Andre F.
Reference classes in healthcare establish healthy norms, such as pediatric growth charts of height and weight, and are used to chart deviations from these norms which represent potential clinical risk. How the demographics of the reference class influence clinical interpretation of deviations is unknown. Using normative modeling, a method for building reference classes, we evaluate the fairness (racial bias) in reference models of structural brain images that are widely used in psychiatry and neurology. We test whether including race in the model creates fairer models. We predict self-reported race using the deviation scores from three different reference class normative models, to better understand bias in an integrated, multivariate sense. Across all of these tasks, we uncover racial disparities that are not easily addressed with existing data or commonly used modeling techniques. Our work suggests that deviations from the norm could be due to demographic mismatch with the reference class, and assigning clinical meaning to these deviations should be done with caution. Our approach also suggests that acquiring more representative samples is an urgent research priority.
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Process Variant Analysis Across Continuous Features: A Novel Framework
Norouzifar, Ali, Rafiei, Majid, Dees, Marcus, van der Aalst, Wil
Extracted event data from information systems often contain a variety of process executions making the data complex and difficult to comprehend. Unlike current research which only identifies the variability over time, we focus on other dimensions that may play a role in the performance of the process. This research addresses the challenge of effectively segmenting cases within operational processes based on continuous features, such as duration of cases, and evaluated risk score of cases, which are often overlooked in traditional process analysis. We present a novel approach employing a sliding window technique combined with the earth mover's distance to detect changes in control flow behavior over continuous dimensions. This approach enables case segmentation, hierarchical merging of similar segments, and pairwise comparison of them, providing a comprehensive perspective on process behavior. We validate our methodology through a real-life case study in collaboration with UWV, the Dutch employee insurance agency, demonstrating its practical applicability. This research contributes to the field by aiding organizations in improving process efficiency, pinpointing abnormal behaviors, and providing valuable inputs for process comparison, and outcome prediction.
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Improving Normative Modeling for Multi-modal Neuroimaging Data using mixture-of-product-of-experts variational autoencoders
Kumar, Sayantan, Payne, Philip, Sotiras, Aristeidis
Normative models in neuroimaging learn the brain patterns of healthy population distribution and estimate how disease subjects like Alzheimer's Disease (AD) deviate from the norm. Existing variational autoencoder (VAE)-based normative models using multimodal neuroimaging data aggregate information from multiple modalities by estimating product or averaging of unimodal latent posteriors. This can often lead to uninformative joint latent distributions which affects the estimation of subject-level deviations. In this work, we addressed the prior limitations by adopting the Mixture-of-Product-of-Experts (MoPoE) technique which allows better modelling of the joint latent posterior. Our model labelled subjects as outliers by calculating deviations from the multimodal latent space. Further, we identified which latent dimensions and brain regions were associated with abnormal deviations due to AD pathology.
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Multi-modal Variational Autoencoders for normative modelling across multiple imaging modalities
Aguila, Ana Lawry, Chapman, James, Altmann, Andre
One of the challenges of studying common neurological disorders is disease heterogeneity including differences in causes, neuroimaging characteristics, comorbidities, or genetic variation. Normative modelling has become a popular method for studying such cohorts where the 'normal' behaviour of a physiological system is modelled and can be used at subject level to detect deviations relating to disease pathology. For many heterogeneous diseases, we expect to observe abnormalities across a range of neuroimaging and biological variables. However, thus far, normative models have largely been developed for studying a single imaging modality. We aim to develop a multi-modal normative modelling framework where abnormality is aggregated across variables of multiple modalities and is better able to detect deviations than uni-modal baselines. We propose two multi-modal VAE normative models to detect subject level deviations across T1 and DTI data. Our proposed models were better able to detect diseased individuals, capture disease severity, and correlate with patient cognition than baseline approaches. We also propose a multivariate latent deviation metric, measuring deviations from the joint latent space, which outperformed feature-based metrics.
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Normative Modeling using Multimodal Variational Autoencoders to Identify Abnormal Brain Structural Patterns in Alzheimer Disease
Kumar, Sayantan, Payne, Philip, Sotiras, Aristeidis
Normative modelling is an emerging method for understanding the underlying heterogeneity within brain disorders like Alzheimer Disease (AD) by quantifying how each patient deviates from the expected normative pattern that has been learned from a healthy control distribution. Since AD is a multifactorial disease with more than one biological pathways, multimodal magnetic resonance imaging (MRI) neuroimaging data can provide complementary information about the disease heterogeneity. However, existing deep learning based normative models on multimodal MRI data use unimodal autoencoders with a single encoder and decoder that may fail to capture the relationship between brain measurements extracted from different MRI modalities. In this work, we propose multi-modal variational autoencoder (mmVAE) based normative modelling framework that can capture the joint distribution between different modalities to identify abnormal brain structural patterns in AD. Our multi-modal framework takes as input Freesurfer processed brain region volumes from T1-weighted (cortical and subcortical) and T2-weighed (hippocampal) scans of cognitively normal participants to learn the morphological characteristics of the healthy brain. The estimated normative model is then applied on Alzheimer Disease (AD) patients to quantify the deviation in brain volumes and identify the abnormal brain structural patterns due to the effect of the different AD stages. Our experimental results show that modeling joint distribution between the multiple MRI modalities generates deviation maps that are more sensitive to disease staging within AD, have a better correlation with patient cognition and result in higher number of brain regions with statistically significant deviations compared to a unimodal baseline model with all modalities concatenated as a single input.