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Self-supervised and Multi-fidelity Learning for Extended Predictive Soil Spectroscopy
Sun, Luning, Safanelli, José L., Sanderman, Jonathan, Georgiou, Katerina, Brungard, Colby, Grover, Kanchan, Hopkins, Bryan G., Liu, Shusen, Bremer, Timo
We propose a self-supervised machine learning (SSML) framework for multi-fidelity learning and extended predictive soil spectroscopy based on latent space embeddings. A self-supervised representation was pretrained with the large MIR spectral library and the Variational Autoencoder algorithm to obtain a compressed latent space for generating spectral embeddings. At this stage, only unlabeled spectral data were used, allowing us to leverage the full spectral database and the availability of scan repeats for augmented training. We also leveraged and froze the trained MIR decoder for a spectrum conversion task by plugging it into a NIR encoder to learn the mapping between NIR and MIR spectra in an attempt to leverage the predictive capabilities contained in the large MIR library with a low cost portable NIR scanner. This was achieved by using a smaller subset of the KSSL library with paired NIR and MIR spectra. Downstream machine learning models were then trained to map between original spectra, predicted spectra, and latent space embeddings for nine soil properties. The performance of was evaluated independently of the KSSL training data using a gold-standard test set, along with regression goodness-of-fit metrics. Compared to baseline models, the proposed SSML and its embeddings yielded similar or better accuracy in all soil properties prediction tasks. Predictions derived from the spectrum conversion (NIR to MIR) task did not match the performance of the original MIR spectra but were similar or superior to predictive performance of NIR-only models, suggesting the unified spectral latent space can effectively leverage the larger and more diverse MIR dataset for prediction of soil properties not well represented in current NIR libraries.
- Food & Agriculture > Agriculture (1.00)
- Energy (0.93)
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Deep Depth Estimation from Thermal Image: Dataset, Benchmark, and Challenges
--Achieving robust and accurate spatial perception under adverse weather and lighting conditions is crucial for the high-level autonomy of self-driving vehicles and robots. However, existing perception algorithms relying on the visible spectrum are highly affected by weather and lighting conditions. A long-wave infrared camera ( i.e., thermal imaging camera) can be a potential solution to achieve high-level robustness. However, the absence of large-scale datasets and standardized benchmarks remains a significant bottleneck to progress in active research for robust visual perception from thermal images. Lastly, we provide in-depth analyses and discuss the challenges revealed by the benchmark results, such as the performance variability for each modality under adverse conditions, domain shift between different sensor modalities, and potential research direction for thermal perception. AUTONOMOUS driving aims to develop intelligent vehicles capable of perceiving their surrounding environments, understanding current contextual information, and making decisions to drive safely without human intervention. Recent advancements in autonomous vehicles, such as Tesla and Waymo, have been driven by deep neural networks and large-scale vehicular datasets, such as KITTI [1], DDAD [2], and nuScenes [3]. Manuscript received March XX, 2025; revised April XX, 2025. This work was supported by the National Research Foundation of Korea(NRF) grant funded by the Korea government(MSIT)(RS-2024-00358935). Ukcheol Shin is with the Robotics Institute, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America (e-mail: ushin@andrew.cmu.edu). Jinsun Park is with the School of Computer Science and Engineering, Pusan National University, Busan, Republic of Korea (e-mail: jspark@pusan.ac.kr). Color versions of one or more figures in this article are available at https://doi.org/xx.xxxx/TIV However, a major drawback of existing vehicular datasets is their reliance on visible-spectrum images, which are easily affected by weather and lighting conditions such as rain, fog, dust, haze, and low light. Therefore, recent research has actively explored alternative sensors such as Near-Infrared (NIR) cameras [8], Li-DARs [9], [10], radars [11], [12], and long-wave infrared (LWIR) cameras [13], [14] to achieve reliable and robust visual perception in adverse weather and lighting conditions. Among these sensors, LWIR camera ( i.e., thermal camera) has gained popularity because of its competitive price, adverse weather robustness, and unique modality information ( i.e., temperature).
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LimeSoDa: A Dataset Collection for Benchmarking of Machine Learning Regressors in Digital Soil Mapping
Schmidinger, J., Vogel, S., Barkov, V., Pham, A. -D., Gebbers, R., Tavakoli, H., Correa, J., Tavares, T. R., Filippi, P., Jones, E. J., Lukas, V., Boenecke, E., Ruehlmann, J., Schroeter, I., Kramer, E., Paetzold, S., Kodaira, M., Wadoux, A. M. J. -C., Bragazza, L., Metzger, K., Huang, J., Valente, D. S. M., Safanelli, J. L., Bottega, E. L., Dalmolin, R. S. D., Farkas, C., Steiger, A., Horst, T. Z., Ramirez-Lopez, L., Scholten, T., Stumpf, F., Rosso, P., Costa, M. M., Zandonadi, R. S., Wetterlind, J., Atzmueller, M.
Digital soil mapping (DSM) relies on a broad pool of statistical methods, yet determining the optimal method for a given context remains challenging and contentious. Benchmarking studies on multiple datasets are needed to reveal strengths and limitations of commonly used methods. Existing DSM studies usually rely on a single dataset with restricted access, leading to incomplete and potentially misleading conclusions. To address these issues, we introduce an open-access dataset collection called Precision Liming Soil Datasets (LimeSoDa). LimeSoDa consists of 31 field- and farm-scale datasets from various countries. Each dataset has three target soil properties: (1) soil organic matter or soil organic carbon, (2) clay content and (3) pH, alongside a set of features. Features are dataset-specific and were obtained by optical spectroscopy, proximal- and remote soil sensing. All datasets were aligned to a tabular format and are ready-to-use for modeling. We demonstrated the use of LimeSoDa for benchmarking by comparing the predictive performance of four learning algorithms across all datasets. This comparison included multiple linear regression (MLR), support vector regression (SVR), categorical boosting (CatBoost) and random forest (RF). The results showed that although no single algorithm was universally superior, certain algorithms performed better in specific contexts. MLR and SVR performed better on high-dimensional spectral datasets, likely due to better compatibility with principal components. In contrast, CatBoost and RF exhibited considerably better performances when applied to datasets with a moderate number (< 20) of features. These benchmarking results illustrate that the performance of a method is highly context-dependent. LimeSoDa therefore provides an important resource for improving the development and evaluation of statistical methods in DSM.
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Fedward: Flexible Federated Backdoor Defense Framework with Non-IID Data
Chen, Zekai, Wang, Fuyi, Zheng, Zhiwei, Liu, Ximeng, Lin, Yujie
Federated learning (FL) enables multiple clients to collaboratively train deep learning models while considering sensitive local datasets' privacy. However, adversaries can manipulate datasets and upload models by injecting triggers for federated backdoor attacks (FBA). Existing defense strategies against FBA consider specific and limited attacker models, and a sufficient amount of noise to be injected only mitigates rather than eliminates FBA. To address these deficiencies, we introduce a Flexible Federated Backdoor Defense Framework (Fedward) to ensure the elimination of adversarial backdoors. We decompose FBA into various attacks, and design amplified magnitude sparsification (AmGrad) and adaptive OPTICS clustering (AutoOPTICS) to address each attack. Meanwhile, Fedward uses the adaptive clipping method by regarding the number of samples in the benign group as constraints on the boundary. This ensures that Fedward can maintain the performance for the Non-IID scenario. We conduct experimental evaluations over three benchmark datasets and thoroughly compare them to state-of-the-art studies. The results demonstrate the promising defense performance from Fedward, moderately improved by 33% $\sim$ 75 in clustering defense methods, and 96.98%, 90.74%, and 89.8% for Non-IID to the utmost extent for the average FBA success rate over MNIST, FMNIST, and CIFAR10, respectively.
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Null/No Information Rate (NIR): a statistical test to assess if a classification accuracy is significant for a given problem
Bicego, Manuele, Mensi, Antonella
In many research contexts, especially in the biomedical field, after studying and developing a classification system a natural question arises: "Is this accuracy enough high?", or better, "Can we say, with a statistically significant confidence, that our classification system is able to solve the problem"? To answer to this question we can use the statistical test described in this paper, which is referred in some cases as NIR (No Information Rate or Null Information Rate). In many research contexts, especially in the biomedical field, we have a classification problem for which we develop a classification system. Then we evaluate the performances of such system by measuring its classification accuracy (or error), typically estimated with a Cross Validation protocol. In particular we have a dataset, which contains objects for which we know the true category, and we split the dataset in two separated sets: one, called training set, is used to build the classifier and the other, called testing set, is used to test it: we classify the objects in the testing set with the trained classifier and we count the number of times our classifier provides a correct answer, i.e. the answer of the classifier on a given object is identical to its true label.
Dual-sPLS: a family of Dual Sparse Partial Least Squares regressions for feature selection and prediction with tunable sparsity; evaluation on simulated and near-infrared (NIR) data
Alsouki, Louna, Duval, Laurent, Marteau, Clément, Haddad, Rami El, Wahl, François
Relating a set of variables X to a response y is crucial in chemometrics. A quantitative prediction objective can be enriched by qualitative data interpretation, for instance by locating the most influential features. When high-dimensional problems arise, dimension reduction techniques can be used. Most notable are projections (e.g. Partial Least Squares or PLS ) or variable selections (e.g. lasso). Sparse partial least squares combine both strategies, by blending variable selection into PLS. The variant presented in this paper, Dual-sPLS, generalizes the classical PLS1 algorithm. It provides balance between accurate prediction and efficient interpretation. It is based on penalizations inspired by classical regression methods (lasso, group lasso, least squares, ridge) and uses the dual norm notion. The resulting sparsity is enforced by an intuitive shrinking ratio parameter. Dual-sPLS favorably compares to similar regression methods, on simulated and real chemical data. Code is provided as an open-source package in R: \url{https://CRAN.R-project.org/package=dual.spls}.
Spectroscopy and Chemometrics + Machine-Learning News Weekly #36, 2022
NIR Calibration-Model Services Services for Professional Development of NIRS Calibrations NIR Near-Infrared-Spectroscopy QA QC QAQC Laboratory LINK Spectroscopy and Chemometrics News Weekly 35, 2022 NIRS NIR Spectroscopy MachineLearning Spectrometer Spectrometric Analytical Chemistry Chemical Analysis Lab Labs Laboratories Laboratory Software IoT Sensors QA QC Testing Quality LINK Near-Infrared Spectroscopy (NIRS) "Comparing Calibration Algorithms for the Rapid Characterization of Pretreated Corn Stover Using Near-Infrared Spectroscopy" LINK "Indirect Measurement of -Glucan Content in Barley Grain with Near-Infrared Reflectance Spectroscopy" LINK "Foods: Markov Transition Field Combined with Convolutional Neural Network Improved the Predictive Performance of Near-Infrared Spectroscopy Models for Determination of Aflatoxin B1 in Maize" LINK "Determination of Fruit Freshness Using Near-Infrared Spectroscopy and Machine Learning Techniques" LINK "Extensive evaluation of prediction ...
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Spectroscopy and Chemometrics-Machine-Learning News Weekly #34, 2022
NIR Calibration-Model Services Spectroscopy and Chemometrics News Weekly 33, 2022 NIRS NIR Spectroscopy MachineLearning Spectrometer Spectrometric Analytical Chemistry Chemical Analysis Lab Labs Laboratories Laboratory Software IoT Sensors QA QC Testing Quality LINK Spektroskopie und Chemometrie Neuigkeiten Wöchentlich 33, 2022 NIRS NIR Spektroskopie MachineLearning Spektrometer IoT Sensor Nahinfrarot Chemie Analytik Analysengeräte Analysentechnik Analysemethode Nahinfrarotspektroskopie Laboranalyse LINK Spettroscopia e Chemiometria Weekly News 33, 2022 NIRS NIR Spettroscopia MachineLearning analisi chimica Spettrale Spettrometro Chem IoT Sensore Attrezzatura analitica Laboratorio analisi prova qualità Analysesystem QualityControl LINK Near-Infrared Spectroscopy (NIRS) "Comparative Performance of NIR-Hyperspectral Imaging Systems" LINK "Near infrared spectroscopy calibration strategies to predict multiple nutritional parameters of pasture species from different functional groups" LINK "Near-infrared spectroscopy as a tool to assist Sargassum fusiforme quality grading: Harvest time discrimination and polyphenol prediction" LINK "Sensors : Using Vis-NIR Spectroscopy for Predicting Quality Compounds in Foods" LINK "Development of an amino acid sequence-dependent analytical method for peptides using near-infrared spectroscopy" LINK "NDT model study of crown pear based on near infrared spectroscopy" LINK "Analyzing the Water Confined in Hydrogel Using Near-Infrared Spectroscopy" LINK "Foods : Finite Element Analysis and Near-Infrared Hyperspectral Reflectance Imaging for the Determination of Blueberry Bruise Grading" LINK "Application of near infrared spectroscopy in sub-surface monitoring of petroleum contaminants in laboratory-prepared soils" LINK "Identification of multiple raisins by feature fusion combined with NIR spectroscopy" LINK " … of quality markers for quality control of Zanthoxylum nitidum using ultra-performance liquid chromatography coupled with near infrared spectroscopy" LINK "Karakterisasi Fitokimia Enkapsulasi Nira Tebu Powder dengan Menggunakan Varietas BL, PSDK-923, dan PSBM-901" LINK "Inside the Egg--Demonstrating Provenance Without the Cracking Using Near Infrared Spectroscopy" LINK "Organic resources from Madagascar: Dataset of chemical and near-infrared spectroscopy measurements" LINK "An alternative method for identification of industrial tomato hybrids using NIRS" LINK "Uniformity evaluation of stem distribution in cut tobacco and single cigarette by near infrared spectroscopy" LINK "A General and Scalable Vision Framework for Functional Near-Infrared Spectroscopy Classification" LINK "Near infrared spectroscopy for the pre-cure freezing discrimination of Montanera Iberian dry-cured lomito" LINK "Determination of Moisture and Protein Content in Living Mealworm Larvae (Tenebrio molitor L.) Using Near-Infrared Reflectance Spectroscopy (NIRS)" LINK "Towards Inline Prediction of Color Development for Wood Stained with Chemical Stains Using Near-Infrared Spectroscopy" LINK "Comparison Between Pure Component Modeling Approaches for Monitoring Pharmaceutical Powder Blends with Near-Infrared Spectroscopy in Continuous Manufacturing Schemes" LINK "Potential of NIRS technology for the determination of cannabinoid content in industrial hemp (Cannabis sativa L.)" LINK " A Variable Selection Method Based on Fast Nondominated Sorting Genetic Algorithm for Qualitative Discrimination of Near Infrared Spectroscopy" LINK "Scale invariance in fNIRS as a measurement of cognitive load" LINK "Quantification of Salicylates and Flavonoids in Poplar Bark and Leaves Based on IR, NIR, and Raman Spectra" LINK Infrared Spectroscopy (IR) and Near-Infrared Spectroscopy (NIR) "Near-infrared spectroscopy monitoring during endovascular treatment for acute ischaemic stroke" LINK "Keakuratan Teknologi Near Infrared Dalam Mengukur Dan Memetakan Bahan Organik Di Pulau Lombok" LINK "NearInfrared Spectroscopic Characterization of Cardiac and Renal Fibrosis in Fixed and Fresh Rat Tissue" LINK "Application of Fourier transform infrared spectroscopy (FTIR) techniques in the mid-IR (MIR) and near-IR (NIR) spectroscopy to determine n-alkane and long-chain alcohol contents in plant species and faecal samples" LINK Hyperspectral Imaging (HSI) "Detection Storage Time of Mild Bruise's Loquats Using Hyperspectral Imaging" LINK "Determination of plumpness for kernel of semen ziziphi spinosae use of hyperspectral transmittance imaging technology coupled with improved Otsu algorithm" LINK "Prediction of oil content in single maize kernel based on hyperspectral imaging and attention convolution neural network" LINK "Convolutional neural networks for mapping of lake sediment core particle size using hyperspectral imaging" LINK Spectral Imaging "Applied Sciences : Non-Invasive Monitoring of the Thermal and Morphometric Characteristics of Lettuce Grown in an Aeroponic System through Multispectral Image System" LINK Chemometrics and Machine Learning "Rapid quantification of goat milk adulteration with cow milk using Raman spectroscopy and chemometrics" LINK "Plants : Prediction of Oil Palm Yield Using Machine Learning in the Perspective of Fluctuating Weather and Soil Moisture Conditions: Evaluation of a Generic Workflow" LINK "Near Infrared Spectra Data Analysis by Using Machine Learning Algorithms" LINK "Applied Sciences : Deep-Learning Model Selection and Parameter Estimation from a Wind Power Farm in Taiwan" LINK "Predicting maize LAI in partial least square modeling by continuous wavelet transform and uninformative variable elimination from canopy spectral reflectance" LINK "Machine Learning Algorithms for Protein Physicochemical Component Prediction Using Near Infrared Spectroscopy in Chickpea Germplasm" LINK "NIR Validation and Calibration of Proximate components of available Corn Silage in Bangladesh." 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Spectroscopy and Chemometrics News Weekly #47, 2020
NIR Calibration-Model Services Spectroscopy and Chemometrics News Weekly 46, 2020 NIRS NIR Spectroscopy MachineLearning Spectrometer Spectrometric Analytical Chemistry foodindustry Analysis Lab Laboratories Laboratory Software IoT Sensors QA QC Testing Quality LINK Get the Spectroscopy and Chemometrics News Weekly in real time on Twitter @ CalibModel and follow us. Near-Infrared Spectroscopy (NIRS) "Near infrared absorption spectroscopy for the quantification of unsulfated alcohol in sodium lauryl ether sulfate" LINK "Estimation of Organic Carbon in Anthropogenic Soil by VIS-NIR Spectroscopy: Effect of Variable Selection" LINK "Near infrared spectroscopy (NIRS) based high-throughput online assay for key cell wall features that determine sugarcane bagasse digestibility") LINK "Authentication of barley-finished beef using visible and near infrared spectroscopy (Vis-NIRS) and different discrimination approaches" LINK "Energetic Distribution of States in Irradiated Low-Density ...
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Spectroscopy and Chemometrics News Weekly #3, 2020
Near Infrared (NIR) Spectroscopy "Fourier-transform near infrared spectroscopy (FT-NIRS) rapidly and non-destructively predicts daily age and growth in otoliths of juvenile red snapper Lutjanus …" LINK "Desarrollo de Modelos NIRS de Predicción para el Análisis de la Finura de Fibras Textiles de Vicuña y Llama" LINK "fNIRS-GANs: Data augmentation using generative adversarial networks for classifying motor tasks from functional near-infrared spectroscopy."