mycotoxin
Predicting Mycotoxin Contamination in Irish Oats Using Deep and Transfer Learning
Inglis, Alan, Doohan, Fiona, Natarajan, Subramani, McNulty, Breige, Elliott, Chris, Nugent, Anne, Meneely, Julie, Greer, Brett, Kildea, Stephen, Bucur, Diana, Danaher, Martin, Di Rocco, Melissa, Black, Lisa, Gauley, Adam, McKenna, Naoise, Parnell, Andrew
Mycotoxin contamination poses a significant risk to cereal crop quality, food safety, and agricultural productivity. Accurate prediction of mycotoxin levels can support early intervention strategies and reduce economic losses. This study investigates the use of neural networks and transfer learning models to predict mycotoxin contamination in Irish oat crops as a multi-response prediction task. Our dataset comprises oat samples collected in Ireland, containing a mix of environmental, agronomic, and geographical predictors. Five modelling approaches were evaluated: a baseline multilayer perceptron (MLP), an MLP with pre-training, and three transfer learning models; TabPFN, TabNet, and FT-Transformer. Model performance was evaluated using regression (RMSE, $R^2$) and classification (AUC, F1) metrics, with results reported per toxin and on average. Additionally, permutation-based variable importance analysis was conducted to identify the most influential predictors across both prediction tasks. The transfer learning approach TabPFN provided the overall best performance, followed by the baseline MLP. Our variable importance analysis revealed that weather history patterns in the 90-day pre-harvest period were the most important predictors, alongside seed moisture content.
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- Food & Agriculture > Agriculture > Pest Control (0.47)
Machine Learning Applied to the Detection of Mycotoxin in Food: A Review
Inglis, Alan, Parnell, Andrew, Subramani, Natarajan, Doohan, Fiona
Mycotoxins are a group of naturally occurring, toxic chemical compounds produced by certain species of moulds (fungi), during growth on various crops and foodstuffs, including cereals, nuts, spices and dairy products (The World Health Organization (WHO), 2023). The ingestion of certain mycotoxins has been linked to a range of harmful health impacts on both humans and animals, from short-term poisoning to long-term consequences such as liver cancer, and in some cases, death (Mavrommatis et al., 2021; Marroquín-Cardona et al., 2014; Liu and Wu, 2010). Mycotoxins are secondary metabolites (that is, compounds produced by an organism that are not essential for its primary life processes) and are often produced during the pre-harvest, harvest, and storage phases under favourable conditions of humidity and temperature (Marroquín-Cardona et al., 2014; Van der Fels-Klerx et al., 2022). The most prevalent mycotoxins include aflatoxins, tricothecenes, fumonisins, zearalenones, ochratoxins and patulin, and are produced by certain plant-pathogenic species of Aspergillus, Fusarium, and Penicillium (Tola and Kebede, 2016). Mycotoxin contamination in crop products has been found to vary significantly across different geographical locations and is influenced by annual weather conditions (Logrieco et al., 2021; Leggieri et al., 2020).
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How these 10 emerging technologies could change the world
Coleman's work with low-dimensional nanostructures, as well as Nicolosi's in the field of battery development, bring 2D materials to the fore. Plummeting production costs mean that such 2D materials are emerging with a wide range of applications. Thomas Swann, for example, produces materials in commercial quantities, though the research in Ireland would largely relate to smaller measurements.
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