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 morphological change


Point-Based Shape Representation Generation with a Correspondence-Preserving Diffusion Model

arXiv.org Artificial Intelligence

We propose a diffusion model designed to generate point-based shape representations with correspondences. Traditional statistical shape models have considered point correspondences extensively, but current deep learning methods do not take them into account, focusing on unordered point clouds instead. Current deep generative models for point clouds do not address generating shapes with point correspondences between generated shapes. This work aims to formulate a diffusion model that is capable of generating realistic point-based shape representations, which preserve point correspondences that are present in the training data. Using shape representation data with correspondences derived from Open Access Series of Imaging Studies 3 (OASIS-3), we demonstrate that our correspondence-preserving model effectively generates point-based hippocampal shape representations that are highly realistic compared to existing methods. We further demonstrate the applications of our generative model by downstream tasks, such as conditional generation of healthy and AD subjects and predicting morphological changes of disease progression by counterfactual generation.


Modeling the Biological Pathology Continuum with HSIC-regularized Wasserstein Auto-encoders

arXiv.org Machine Learning

A crucial challenge in image-based modeling of biomedical data is to identify trends and features that separate normality and pathology. In many cases, the morphology of the imaged object exhibits continuous change as it deviates from normality, and thus a generative model can be trained to model this morphological continuum. Moreover, given side information that correlates to certain trend in morphological change, a latent variable model can be regularized such that its latent representation reflects this side information. In this work, we use the Wasserstein Auto-encoder to model this pathology continuum, and apply the Hilbert-Schmitt Independence Criterion (HSIC) to enforce dependency between certain latent features and the provided side information. We experimentally show that the model can provide disentangled and interpretable latent representations and also generate a continuum of morphological changes that corresponds to change in the side information.


Scalable Co-Optimization of Morphology and Control in Embodied Machines

arXiv.org Artificial Intelligence

Evolution sculpts both the body plans and nervous systems of agents together over time. In contrast, in AI and robotics, a robot's body plan is usually designed by hand, and control policies are then optimized for that fixed design. The task of simultaneously co-optimizing the morphology and controller of an embodied robot has remained a challenge. In psychology, the theory of embodied cognition posits that behavior arises from a close coupling between body plan and sensorimotor control, which suggests why co-optimizing these two subsystems is so difficult: most evolutionary changes to morphology tend to adversely impact sensorimotor control, leading to an overall decrease in behavioral performance. Here, we further examine this hypothesis and demonstrate a technique for "morphological innovation protection", which temporarily reduces selection pressure on recently morphologically-changed individuals, thus enabling evolution some time to "readapt" to the new morphology with subsequent control policy mutations. We show the potential for this method to avoid local optima and converge to similar highly fit morphologies across widely varying initial conditions, while sustaining fitness improvements further into optimization. While this technique is admittedly only the first of many steps that must be taken to achieve scalable optimization of embodied machines, we hope that theoretical insight into the cause of evolutionary stagnation in current methods will help to enable the automation of robot design and behavioral training -- while simultaneously providing a testbed to investigate the theory of embodied cognition.


Are Ontologies Involved in Natural Language Processing?

AAAI Conferences

For certain disable persons unable to communicate, we present a palliative aid which consists of a virtual pictographic keyboard associated to a text processing from a pictographic scripture. Words and the grammar are given as pictograms. The pictographic lexicon must be organized following the mental lexicon of the user to propose the pictograms of grammar in order to facilitate his (her) task of writing. We discuss the utility of ontologies in the organization of lexicons and in the building of texts.