minicube
Explainable Earth Surface Forecasting under Extreme Events
Pellicer-Valero, Oscar J., Fernández-Torres, Miguel-Ángel, Ji, Chaonan, Mahecha, Miguel D., Camps-Valls, Gustau
With climate change-related extreme events on the rise, high dimensional Earth observation data presents a unique opportunity for forecasting and understanding impacts on ecosystems. This is, however, impeded by the complexity of processing, visualizing, modeling, and explaining this data. To showcase how this challenge can be met, here we train a convolutional long short-term memory-based architecture on the novel DeepExtremeCubes dataset. DeepExtremeCubes includes around 40,000 long-term Sentinel-2 minicubes (January 2016-October 2022) worldwide, along with labeled extreme events, meteorological data, vegetation land cover, and topography map, sampled from locations affected by extreme climate events and surrounding areas. When predicting future reflectances and vegetation impacts through kernel normalized difference vegetation index, the model achieved an R$^2$ score of 0.9055 in the test set. Explainable artificial intelligence was used to analyze the model's predictions during the October 2020 Central South America compound heatwave and drought event. We chose the same area exactly one year before the event as counterfactual, finding that the average temperature and surface pressure are generally the best predictors under normal conditions. In contrast, minimum anomalies of evaporation and surface latent heat flux take the lead during the event. A change of regime is also observed in the attributions before the event, which might help assess how long the event was brewing before happening. The code to replicate all experiments and figures in this paper is publicly available at https://github.com/DeepExtremes/txyXAI
DeepExtremeCubes: Integrating Earth system spatio-temporal data for impact assessment of climate extremes
Ji, Chaonan, Fincke, Tonio, Benson, Vitus, Camps-Valls, Gustau, Fernandez-Torres, Miguel-Angel, Gans, Fabian, Kraemer, Guido, Martinuzzi, Francesco, Montero, David, Mora, Karin, Pellicer-Valero, Oscar J., Robin, Claire, Soechting, Maximilian, Weynants, Melanie, Mahecha, Miguel D.
With climate extremes' rising frequency and intensity, robust analytical tools are crucial to predict their impacts on terrestrial ecosystems. Machine learning techniques show promise but require well-structured, high-quality, and curated analysis-ready datasets. Earth observation datasets comprehensively monitor ecosystem dynamics and responses to climatic extremes, yet the data complexity can challenge the effectiveness of machine learning models. Despite recent progress in deep learning to ecosystem monitoring, there is a need for datasets specifically designed to analyse compound heatwave and drought extreme impact. Here, we introduce the DeepExtremeCubes database, tailored to map around these extremes, focusing on persistent natural vegetation. It comprises over 40,000 spatially sampled small data cubes (i.e. minicubes) globally, with a spatial coverage of 2.5 by 2.5 km. Each minicube includes (i) Sentinel-2 L2A images, (ii) ERA5-Land variables and generated extreme event cube covering 2016 to 2022, and (iii) ancillary land cover and topography maps. The paper aims to (1) streamline data accessibility, structuring, pre-processing, and enhance scientific reproducibility, and (2) facilitate biosphere dynamics forecasting in response to compound extremes.
Forecasting localized weather impacts on vegetation as seen from space with meteo-guided video prediction
Benson, Vitus, Requena-Mesa, Christian, Robin, Claire, Alonso, Lazaro, Cortés, José, Gao, Zhihan, Linscheid, Nora, Weynants, Mélanie, Reichstein, Markus
We present a novel approach for modeling vegetation response to weather in Europe as measured by the Sentinel 2 satellite. Existing satellite imagery forecasting approaches focus on photorealistic quality of the multispectral images, while derived vegetation dynamics have not yet received as much attention. We leverage both spatial and temporal context by extending state-of-the-art video prediction methods with weather guidance. We extend the EarthNet2021 dataset to be suitable for vegetation modeling by introducing a learned cloud mask and an appropriate evaluation scheme. Qualitative and quantitative experiments demonstrate superior performance of our approach over a wide variety of baseline methods, including leading approaches to satellite imagery forecasting. Additionally, we show how our modeled vegetation dynamics can be leveraged in a downstream task: inferring gross primary productivity for carbon monitoring. To the best of our knowledge, this work presents the first models for continental-scale vegetation modeling at fine resolution able to capture anomalies beyond the seasonal cycle, thereby paving the way for predictive assessments of vegetation status.
Learning to forecast vegetation greenness at fine resolution over Africa with ConvLSTMs
Robin, Claire, Requena-Mesa, Christian, Benson, Vitus, Alonso, Lazaro, Poehls, Jeran, Carvalhais, Nuno, Reichstein, Markus
Forecasting the state of vegetation in response to climate and weather events is a major challenge. Its implementation will prove crucial in predicting crop yield, forest damage, or more generally the impact on ecosystems services relevant for socio-economic functioning, which if absent can lead to humanitarian disasters. Vegetation status depends on weather and environmental conditions that modulate complex ecological processes taking place at several timescales. Interactions between vegetation and different environmental drivers express responses at instantaneous but also time-lagged effects, often showing an emerging spatial context at landscape and regional scales. We formulate the land surface forecasting task as a strongly guided video prediction task where the objective is to forecast the vegetation developing at very fine resolution using topography and weather variables to guide the prediction. We use a Convolutional LSTM (ConvLSTM) architecture to address this task and predict changes in the vegetation state in Africa using Sentinel-2 satellite NDVI, having ERA5 weather reanalysis, SMAP satellite measurements, and topography (DEM of SRTMv4.1) as variables to guide the prediction. Ours results highlight how ConvLSTM models can not only forecast the seasonal evolution of NDVI at high resolution, but also the differential impacts of weather anomalies over the baselines. The model is able to predict different vegetation types, even those with very high NDVI variability during target length, which is promising to support anticipatory actions in the context of drought-related disasters.
EarthNet2021: A large-scale dataset and challenge for Earth surface forecasting as a guided video prediction task
Requena-Mesa, Christian, Benson, Vitus, Reichstein, Markus, Runge, Jakob, Denzler, Joachim
Satellite images are snapshots of the Earth surface. We propose to forecast them. We frame Earth surface forecasting as the task of predicting satellite imagery conditioned on future weather. EarthNet2021 is a large dataset suitable for training deep neural networks on the task. It contains Sentinel 2 satellite imagery at 20m resolution, matching topography and mesoscale (1.28km) meteorological variables packaged into 32000 samples. Additionally we frame EarthNet2021 as a challenge allowing for model intercomparison. Resulting forecasts will greatly improve (>x50) over the spatial resolution found in numerical models. This allows localized impacts from extreme weather to be predicted, thus supporting downstream applications such as crop yield prediction, forest health assessments or biodiversity monitoring. Find data, code, and how to participate at www.earthnet.tech