manuscript version
Asymmetric Lesion Detection with Geometric Patterns and CNN-SVM Classification
Rasel, M. A., Kareem, Sameem Abdul, Kwan, Zhenli, Faheem, Nik Aimee Azizah, Han, Winn Hui, Choong, Rebecca Kai Jan, Yong, Shin Shen, Obaidellah, Unaizah
Accepted Manuscript: This is the peer - reviewed version of the article accepted for publication in Computers in Biology and Medicine . This manuscript version is made available under the CC BY - NC - ND license. Abstract In dermoscopic images, which allow visualization of surface skin structures not visible to the naked eye, lesion shape offers vital insights into skin diseases. In clinically practiced methods, asymmetric lesion shape is one of the criteria for diagnosing M elanoma. Initially, we labeled data for a non - annotated dataset with symmetrical information based on clinical assessments . Subsequently, we propose a supporting technique -- a supervised learning image processing algorithm -- to analyze the geometrical pattern of lesion shape, aiding non - experts in understanding the criteria of an asymmetric lesion. We then utilize a pre - trained convolutional neural network (CNN) to extract shape, color, and texture features from dermoscopic images for training a multiclass support vector machine (SVM) classifier, outperforming state - of - the - art methods from the literature. In the geometry - based experiment, we achieved a 99.00% detection rate for dermatological asymmetric lesions. In the CNN - based experiment, the best performance is found 9 4% Kappa Score, 95% Macro F1 - score, and 97 % weighted F1 - score for classifying lesion shapes ( A symmetric, H alf - S ymmetric, and S ymmetric). Introduction Dermatological asymmetry, a cornerstone in skin lesion assessment, refers to disparities observed in the shape, size, or color of moles or lesions [1, 2, 3] . In dermatology, careful examination of the lesion shape is critical, especially when it comes to the possibility that lesions are cancerous, such as Melanoma. The dermatological three - point - checklist for early skin cancer detection has showcased remarkable sensitivity in identifying Melanoma [ 2 ]. The presence of " asymmetry of color and structure in one or two perpendicular axes ", stands as the initial criterion of this checklist [ 2 ]. In this method, asymmetry evaluation entails scrutinizing lesions within a plane bisected by two axes set at 90, assigning a score ranging from 0 to 2 based on the number of axes exhibiting asymmetry in shape, color, or structure.
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Bluish Veil Detection and Lesion Classification using Custom Deep Learnable Layers with Explainable Artificial Intelligence (XAI)
Rasel, M. A., Kareem, Sameem Abdul, Kwan, Zhenli, Yong, Shin Shen, Obaidellah, Unaizah
Melanoma, one of the deadliest types of skin cancer, accounts for thousands of fatalities globally. The bluish, blue-whitish, or blue-white veil (BWV) is a critical feature for diagnosing melanoma, yet research into detecting BWV in dermatological images is limited. This study utilizes a non-annotated skin lesion dataset, which is converted into an annotated dataset using a proposed imaging algorithm based on color threshold techniques on lesion patches and color palettes. A Deep Convolutional Neural Network (DCNN) is designed and trained separately on three individual and combined dermoscopic datasets, using custom layers instead of standard activation function layers. The model is developed to categorize skin lesions based on the presence of BWV. The proposed DCNN demonstrates superior performance compared to conventional BWV detection models across different datasets. The model achieves a testing accuracy of 85.71% on the augmented PH2 dataset, 95.00% on the augmented ISIC archive dataset, 95.05% on the combined augmented (PH2+ISIC archive) dataset, and 90.00% on the Derm7pt dataset. An explainable artificial intelligence (XAI) algorithm is subsequently applied to interpret the DCNN's decision-making process regarding BWV detection. The proposed approach, coupled with XAI, significantly improves the detection of BWV in skin lesions, outperforming existing models and providing a robust tool for early melanoma diagnosis.
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Loss-Aware Automatic Selection of Structured Pruning Criteria for Deep Neural Network Acceleration
Ghimire, Deepak, Lee, Kilho, Kim, Seong-heum
Structured pruning is a well-established technique for compressing neural networks, making it suitable for deployment in resource-limited edge devices. This paper presents an efficient Loss-Aware Automatic Selection of Structured Pruning Criteria (LAASP) for slimming and accelerating deep neural networks. The majority of pruning methodologies employ a sequential process consisting of three stages: 1) training, 2) pruning, and 3) fine-tuning, whereas the proposed pruning technique adopts a pruning-while-training approach that eliminates the first stage and integrates the second and third stages into a single cycle. The automatic selection of magnitude or similarity-based filter pruning criteria from a specified pool of criteria and the specific pruning layer at each pruning iteration is guided by the network's overall loss on a small subset of the training data. To mitigate the abrupt accuracy drop due to pruning, the network is retrained briefly after each reduction of a predefined number of floating-point operations (FLOPs). The optimal pruning rates for each layer in the network are automatically determined, eliminating the need for manual allocation of fixed or variable pruning rates for each layer. Experiments on the VGGNet and ResNet models on the CIFAR-10 and ImageNet benchmark datasets demonstrate the effectiveness of the proposed method. In particular, the ResNet56 and ResNet110 models on the CIFAR-10 dataset significantly improve the top-1 accuracy compared to state-of-the-art methods while reducing the network FLOPs by 52\%. Furthermore, the ResNet50 model on the ImageNet dataset reduces FLOPs by more than 42\% with a negligible 0.33\% drop in top-5 accuracy. The source code of this paper is publicly available online - https://github.com/ghimiredhikura/laasp.
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Multi-Agent Deep Reinforcement Learning for Resilience Optimization in 5G RAN
Kaada, Soumeya, Tran, Dinh-Hieu, Van Huynh, Nguyen, Morel, Marie-Line Alberi, Jelassi, Sofiene, Rubino, Gerardo
Resilience is defined as the ability of a network to resist, adapt, and quickly recover from disruptions, and to continue to maintain an acceptable level of services from users' perspective. With the advent of future radio networks, including advanced 5G and upcoming 6G, critical services become integral to future networks, requiring uninterrupted service delivery for end users. Unfortunately, with the growing network complexity, user mobility and diversity, it becomes challenging to scale current resilience management techniques that rely on local optimizations to large dense network deployments. This paper aims to address this problem by globally optimizing the resilience of a dense multi-cell network based on multi-agent deep reinforcement learning. Specifically, our proposed solution can dynamically tilt cell antennas and reconfigure transmit power to mitigate outages and increase both coverage and service availability. A multi-objective optimization problem is formulated to simultaneously satisfy resiliency constraints while maximizing the service quality in the network area in order to minimize the impact of outages on neighbouring cells. Extensive simulations then demonstrate that with our proposed solution, the average service availability in terms of user throughput can be increased by up to 50-60% on average, while reaching a coverage availability of 99% in best cases.
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Bayesian Structural Model Updating with Multimodal Variational Autoencoder
Itoi, Tatsuya, Amishiki, Kazuho, Lee, Sangwon, Yaoyama, Taro
A novel framework for Bayesian structural model updating is presented in this study. The proposed method utilizes the surrogate unimodal encoders of a multimodal variational autoencoder (VAE). The method facilitates an approximation of the likelihood when dealing with a small number of observations. It is particularly suitable for high-dimensional correlated simultaneous observations applicable to various dynamic analysis models. The proposed approach was benchmarked using a numerical model of a single-story frame building with acceleration and dynamic strain measurements. Additionally, an example involving a Bayesian update of nonlinear model parameters for a three-degree-of-freedom lumped mass model demonstrates computational efficiency when compared to using the original VAE, while maintaining adequate accuracy for practical applications.
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JCLEC-MO: a Java suite for solving many-objective optimization engineering problems
Ramírez, Aurora, Romero, José Raúl, García-Martínez, Carlos, Ventura, Sebastián
Hence, the use of efficient search methods has experienced a significant growth in the last years, specially for those engineering problems where there are multiple objectives that require to be simultaneously optimized (Marler and Arora, 2004). A recurrent situation in engineering is the need of jointly optimizing energy consumption, cost or time, among others. All these factors constitute a paramount concern to the expert, and represent conflicting objectives, each one having a deep impact on the final solution (Marler and Arora, 2004). Initially applied to single-objective problems, metaheuristics like evolutionary algorithms (EAs) have been successfully applied to the resolution of multi-objective problems (MOPs) in engineering, such as the design of efficient transport systems (Domínguez et al., 2014) or safe civil structures (Zavala et al., 2014). The presence of a large number of objectives has been recently pointed out as an intrinsic characteristic of engineering problems (Singh, 2016), for which the currently applied techniques might not be efficient enough. It is noteworthy that other communities are also demanding novel techniques to face increasingly complex problems, what has led to the appearance of the many-objective optimization approach(von Lücken et al., 2014; Li et al., 2015). This variant of the more general multi-objective optimization (MOO) is specifically devoted to overcome the limits of existing algorithms when problems having 4 or more objectives, known as many-objective problems (MaOPs), have to be faced. Even though each metaheuristic follows different principles to conduct the search, their adaptation to deal with either MOPs or MaOPs share some similarities, such as the presence of new diversity preservation mechanisms or the use of indicators (Li et al., 2015; Mishra et al., 2015). The resulting many-objective algorithms have proven successful in the engineering field too (Li and Hu, 2014; López-Jaimes and Coello Coello, 2014; Cheng et al., 2017), where specialized software tools have begun to appear (Hadka et al., 2015).
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GEML: A Grammar-based Evolutionary Machine Learning Approach for Design-Pattern Detection
Barbudo, Rafael, Ramírez, Aurora, Servant, Francisco, Romero, José Raúl
Design patterns (DPs) are recognised as a good practice in software development. However, the lack of appropriate documentation often hampers traceability, and their benefits are blurred among thousands of lines of code. Automatic methods for DP detection have become relevant but are usually based on the rigid analysis of either software metrics or specific properties of the source code. We propose GEML, a novel detection approach based on evolutionary machine learning using software properties of diverse nature. Firstly, GEML makes use of an evolutionary algorithm to extract those characteristics that better describe the DP, formulated in terms of human-readable rules, whose syntax is conformant with a context-free grammar. Secondly, a rule-based classifier is built to predict whether new code contains a hidden DP implementation. GEML has been validated over five DPs taken from a public repository recurrently adopted by machine learning studies. Then, we increase this number up to 15 diverse DPs, showing its effectiveness and robustness in terms of detection capability. An initial parameter study served to tune a parameter setup whose performance guarantees the general applicability of this approach without the need to adjust complex parameters to a specific pattern. Finally, a demonstration tool is also provided.
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Docking-based generative approaches in the search for new drug candidates
Danel, Tomasz, Łęski, Jan, Podlewska, Sabina, Podolak, Igor T.
Despite the great popularity of virtual screening of existing compound libraries, the search for new potential drug candidates also takes advantage of generative protocols, where new compound suggestions are enumerated using various algorithms. To increase the activity potency of generative approaches, they have recently been coupled with molecular docking, a leading methodology of structure-based drug design. In this review, we summarize progress since docking-based generative models emerged. We propose a new taxonomy for these methods and discuss their importance for the field of computer-aided drug design. In addition, we discuss the most promising directions for further development of generative protocols coupled with docking.
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Frequency-domain Blind Quality Assessment of Blurred and Blocking-artefact Images using Gaussian Process Regression model
Viqar, Maryam, Moinuddin, Athar A., Khan, Ekram, Ghanbari, M.
Most of the standard image and video codecs are block-based and depending upon the compression ratio the compressed images/videos suffer from different distortions. At low ratios, blurriness is observed and as compression increases blocking artifacts occur. Generally, in order to reduce blockiness, images are low-pass filtered which leads to more blurriness. Also, in bokeh mode images they are commonly seen: blurriness as a result of intentional blurred background while blocking artifact and global blurriness arising due to compression. Therefore, such visual media suffer from both blockiness and blurriness distortions. Along with this, noise is also commonly encountered distortion. Most of the existing works on quality assessment quantify these distortions individually. This paper proposes a methodology to blindly measure overall quality of an image suffering from these distortions, individually as well as jointly. This is achieved by considering the sum of absolute values of low and high-frequency Discrete Frequency Transform (DFT) coefficients defined as sum magnitudes. The number of blocks lying in specific ranges of sum magnitudes including zero-valued AC coefficients and mean of 100 maximum and 100 minimum values of these sum magnitudes are used as feature vectors. These features are then fed to the Machine Learning (ML) based Gaussian Process Regression (GPR) model, which quantifies the image quality. The simulation results show that the proposed method can estimate the quality of images distorted with the blockiness, blurriness, noise and their combinations. It is relatively fast compared to many state-of-art methods, and therefore is suitable for real-time quality monitoring applications.
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Fault Detection for Non-Condensing Boilers using Simulated Building Automation System Sensor Data
Shohet, Rony, Kandil, Mohamed, Wang, Y., McArthur, J. J.
Building performance has been shown to degrade significantly after commissioning, resulting in increased energy consumption and associated greenhouse gas emissions. Continuous Commissioning using existing sensor networks and IoT devices has the potential to minimize this waste by continually identifying system degradation and re-tuning control strategies to adapt to real building performance. Due to its significant contribution to greenhouse gas emissions, the performance of gas boiler systems for building heating is critical. A review of boiler performance studies has been used to develop a set of common faults and degraded performance conditions, which have been integrated into a MATLAB/Simulink emulator. This resulted in a labeled dataset with approximately 10,000 simulations of steady-state performance for each of 14 non-condensing boilers. The collected data is used for training and testing fault classification using K-nearest neighbour, Decision tree, Random Forest, and Support Vector Machines. The results show that the Support Vector Machines method gave the best prediction accuracy, consistently exceeding 90%, and generalization across multiple boilers is not possible due to low classification accuracy.
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