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Predicting Residence Time of GPCR Ligands with Machine Learning - UCL Discovery

#artificialintelligence

Drug-target residence time, the duration of binding at a given protein target, has been shown in some protein families to be more significant for conferring efficacy than binding affinity. To carry out efficient optimization of residence time in drug discovery, machine learning models that can predict that value need to be developed. One of the main challenges with predicting residence time is the paucity of data. This chapter outlines all of the currently available ligand kinetic data, providing a repository that contains the largest publicly available source of GPCR-ligand kinetic data to date. To help decipher the features of kinetic data that might be beneficial to include in computational models for the prediction of residence time, the experimental evidence for properties that influence residence time are summarized.


Data-driven, multi-moment fluid modeling of Landau damping

arXiv.org Artificial Intelligence

Deriving governing equations of complex physical systems based on first principles can be quite challenging when there are certain unknown terms and hidden physical mechanisms in the systems. In this work, we apply a deep learning architecture to learn fluid partial differential equations (PDEs) of a plasma system based on the data acquired from a fully kinetic model. The learned multi-moment fluid PDEs are demonstrated to incorporate kinetic effects such as Landau damping. Based on the learned fluid closure, the data-driven, multi-moment fluid modeling can well reproduce all the physical quantities derived from the fully kinetic model. The calculated damping rate of Landau damping is consistent with both the fully kinetic simulation and the linear theory. The data-driven fluid modeling of PDEs for complex physical systems may be applied to improve fluid closure and reduce the computational cost of multi-scale modeling of global systems.


Predictive Analysis for Detection of Human Neck Postures using a robust integration of kinetics and kinematics

arXiv.org Machine Learning

Human neck postures and movements need to be monitored, measured, quantified and analyzed, as a preventive measure in healthcare applications. Improper neck postures are an increasing source of neck musculoskeletal disorders, requiring therapy and rehabilitation. The motivation for the research presented in this paper was the need to develop a notification mechanism for improper neck usage. Kinematic data captured by sensors have limitations in accurately classifying the neck postures. Hence, we propose an integrated use of kinematic and kinetic data to efficiently classify neck postures. Using machine learning algorithms we obtained 100% accuracy in the predictive analysis of this data. The research analysis and discussions show that the kinetic data of the Hyoid muscles can accurately detect the neck posture given the corresponding kinematic data captured by the neck-band. The proposed robust platform for the integration of kinematic and kinetic data has enabled the design of a smart neck-band for the prevention of neck musculoskeletal disorders.