Knowledge graphs (KG) are essential background knowledge providers in many tasks. When designing models for KG-related tasks, one of the key tasks is to devise the Knowledge Representation and Fusion (KRF) module that learns the representation of elements from KGs and fuses them with task representations. While due to the difference of KGs and perspectives to be considered during fusion across tasks, duplicate and ad hoc KRF modules design are conducted among tasks. In this paper, we propose a novel knowledge graph pretraining model KGTransformer that could serve as a uniform KRF module in diverse KG-related tasks. We pretrain KGTransformer with three self-supervised tasks with sampled sub-graphs as input. For utilization, we propose a general prompt-tuning mechanism regarding task data as a triple prompt to allow flexible interactions between task KGs and task data. We evaluate pretrained KGTransformer on three tasks, triple classification, zero-shot image classification, and question answering. KGTransformer consistently achieves better results than specifically designed task models. Through experiments, we justify that the pretrained KGTransformer could be used off the shelf as a general and effective KRF module across KG-related tasks. The code and datasets are available at https://github.com/zjukg/KGTransformer.

Knowledge graph (KG) embeddings have been a mainstream approach for reasoning over incomplete KGs. However, limited by their inherently shallow and static architectures, they can hardly deal with the rising focus on complex logical queries, which comprise logical operators, imputed edges, multiple source entities, and unknown intermediate entities. In this work, we present the Knowledge Graph Transformer (kgTransformer) with masked pre-training and fine-tuning strategies. We design a KG triple transformation method to enable Transformer to handle KGs, which is further strengthened by the Mixture-of-Experts (MoE) sparse activation. We then formulate the complex logical queries as masked prediction and introduce a two-stage masked pre-training strategy to improve transferability and generalizability. Extensive experiments on two benchmarks demonstrate that kgTransformer can consistently outperform both KG embedding-based baselines and advanced encoders on nine in-domain and out-of-domain reasoning tasks. Additionally, kgTransformer can reason with explainability via providing the full reasoning paths to interpret given answers.