Diffusion models [1, 2, 3] have emerged as a powerful class of generative models, achieving state-of-the-art performance across a wide range of applications, including imaging [2] and scientific-data synthesis [4]. From a statistical perspective, they can be viewed as flexible nonparametric estimators of a (conditional) distribution via score estimation and reverse-time stochastic differential equations (SDEs) [5, 6]. Despite this expressive power, standard diffusion models are typically causality-agnostic: they learn a joint law without encoding the directional asymmetries required for causal interpretation. As a consequence, they do not, on their own, provide principled answers to interventional queries or support broader causal analyses, which are central to structural causal models (SCMs) [7]. When a causal ordering (or a directed acyclic graph) is available, it is natural to construct generative procedures that sample variables sequentially according to the causal factorisation. Such iterative, ordering-respecting approaches have been proposed using a variety of generative models, including generative adversarial networks [8], variational autoencoders [9], normalising flows [10], and diffusion-based constructions such as DDIM [11]. However, a rigorous statistical understandingof the advantages of exploitingsuch causalstructureand the inferential use of the resulting generator remain less developed.

We study semisupervised mean estimation with a small labeled sample, a large unlabeled sample, and a black-box prediction model whose output may be miscalibrated. A standard approach in this setting is augmented inverse-probability weighting (AIPW) [Robins et al., 1994], which protects against prediction-model misspecification but can be inefficient when the prediction score is poorly aligned with the outcome scale. We introduce Calibrated Prediction-Powered Inference, which post-hoc calibrates the prediction score on the labeled sample before using it for semisupervised estimation. This simple step requires no retraining and can improve the original score both as a predictor of the outcome and as a regression adjustment for semisupervised inference. We study both linear and isotonic calibration. For isotonic calibration, we establish first-order optimality guarantees: isotonic post-processing can improve predictive accuracy and estimator efficiency relative to the original score and simpler post-processing rules, while no further post-processing of the fitted isotonic score yields additional first-order gains. For linear calibration, we show first-order equivalence to PPI++. We also clarify the relationship among existing estimators, showing that the original PPI estimator is a special case of AIPW and can be inefficient when the prediction model is accurate, while PPI++ is AIPW with empirical efficiency maximization [Rubin et al., 2008]. In simulations and real-data experiments, our calibrated estimators often outperform PPI and are competitive with, or outperform, AIPW and PPI++. We provide an accompanying Python package, ppi_aipw, at https://larsvanderlaan.github.io/ppi-aipw/.

We introduce Prior-Fitted Functional Flows, a generative foundation model for pharmacokinetics that enables zero-shot population synthesis and individual forecasting without manual parameter tuning. We learn functional vector fields, explicitly conditioned on the sparse, irregular data of an entire study population. This enables the generation of coherent virtual cohorts as well as forecasting of partially observed patient trajectories with calibrated uncertainty. We construct a new open-access literature corpus to inform our priors, and demonstrate state-of-the-art predictive accuracy on extensive real-world datasets.

In this work, we revisit the problem of active sequential prediction-powered mean estimation, where at each round one must decide the query probability of the ground-truth label upon observing the covariates of a sample. Furthermore, if the label is not queried, the prediction from a machine learning model is used instead. Prior work proposed an elegant scheme that determines the query probability by combining an uncertainty-based suggestion with a constant probability that encodes a soft constraint on the query probability. We explored different values of the mixing parameter and observed an intriguing empirical pattern: the smallest confidence width tends to occur when the weight on the constant probability is close to one, thereby reducing the influence of the uncertainty-based component. Motivated by this observation, we develop a non-asymptotic analysis of the estimator and establish a data-dependent bound on its confidence interval. Our analysis further suggests that when a no-regret learning approach is used to determine the query probability and control this bound, the query probability converges to the constraint of the max value of the query probability when it is chosen obliviously to the current covariates. We also conduct simulations that corroborate these theoretical findings.

Variational inference (VI) is a central tool in modern machine learning, used to approximate an intractable target density by optimising over a tractable family of distributions. As the variational family cannot typically represent the target exactly, guarantees on the quality of the resulting approximation are crucial for understanding which of its properties VI can faithfully capture. Recent work has identified instances in which symmetries of the target and the variational family enable the recovery of certain statistics, even under model misspecification. However, these guarantees are inherently problem-specific and offer little insight into the fundamental mechanism by which symmetry forces statistic recovery. In this paper, we overcome this limitation by developing a general theory of symmetry-induced statistic recovery in variational inference. First, we characterise when variational minimisers inherit the symmetries of the target and establish conditions under which these pin down identifiable statistics. Second, we unify existing results by showing that previously known statistic recovery guarantees in location-scale families arise as special cases of our theory. Third, we apply our framework to distributions on the sphere to obtain novel guarantees for directional statistics in von Mises-Fisher families. Together, these results provide a modular blueprint for deriving new recovery guarantees for VI in a broad range of symmetry settings.

Data-driven operations management often relies on parameters estimated from costly human-generated labels. Recent advances in large language models (LLMs) and other AI systems offer inexpensive auxiliary data, but introduce a new challenge: AI outputs are not direct observations of the target outcomes, but could involve high-dimensional representations with complex and unknown relationships to human labels. Conventional methods leverage AI predictions as direct proxies for true labels, which can be inefficient or unreliable when this relationship is weak or misspecified. We propose Generative Augmented Inference (GAI), a general framework that incorporates AI-generated outputs as informative features for estimating models of human-labeled outcomes. GAI uses an orthogonal moment construction that enables consistent estimation and valid inference with flexible, nonparametric relationship between LLM-generated outputs and human labels. We establish asymptotic normality and show a "safe default" property: relative to human-data-only estimators, GAI weakly improves estimation efficiency under arbitrary auxiliary signals and yields strict gains whenever the auxiliary information is predictive. Empirically, GAI outperforms benchmarks across diverse settings. In conjoint analysis with weak auxiliary signals, GAI reduces estimation error by about 50% and lowers human labeling requirements by over 75%. In retail pricing, where all methods access the same auxiliary inputs, GAI consistently outperforms alternative estimators, highlighting the value of its construction rather than differences in information. In health insurance choice, it cuts labeling requirements by over 90% while maintaining decision accuracy. Across applications, GAI improves confidence interval coverage without inflating width. Overall, GAI provides a principled and scalable approach to integrating AI-generated information.

Interference arises when the treatment assigned to one individual affects the outcomes of other individuals. Commonly, individuals are naturally grouped into clusters, and interference occurs only among individuals within the same cluster, a setting referred to as partial interference. We study network causal effects on outcome quantiles in the presence of partial interference. We develop a general nonparametric efficiency theory for estimating these network quantile causal effects, which leads to a nonparametrically efficient estimator. The proposed estimator is consistent and asymptotically normal with parametric convergence rates, while allowing for flexible, data-adaptive estimation of complex nuisance functions. We leverage a three-way cross-fitting procedure that avoids direct estimation of the conditional outcome distribution. Simulations demonstrate adequate finite-sample performance of the proposed estimators, and we apply the methods to a clustered observational study.

We consider the problem of clustering nested or hierarchical data, where observations are grouped and there are both group-level and observation-level variables. In our motivating OneK1K dataset, observations consist of single-cell RNA-sequencing (scRNA-seq) data from 982 individuals (groups), totaling 1.27 million cells (observations), along with individual-specific genotype data. This type of data would enable the identification of cell types and the investigation of how genetic variations among individuals influence differences in cell-type profiles. Our goal, therefore, is to jointly cluster cells and individuals to capture the heterogeneity across both levels using cell-specific gene expressions as well as individual-specific genotypes. However, existing grouped clustering methods do not incorporate group-level variables, thereby limiting their ability to capture the heterogeneity of genotypes in our motivating application. To address this, we propose the Nested Atoms Model (NAM), a new Bayesian nonparametric approach that enables the desired two-layered clustering, accounting for both group-level and observation-level variables. To scale NAM for high-dimensional data, we develop a fast variational Bayesian inference algorithm. Simulations show that NAM outperforms existing methods that ignore group-level variables. Applied to the OneK1K dataset, NAM identifies clusters of genetically similar individuals with homogeneous cell-type profiles. The resulting cell clusters align with known immune cell types based on differential gene expression, underscoring the ability of NAM to capture nested heterogeneity and provide biologically meaningful insights.

Formal model evaluation methods typically certify that a model satisfies a prescribed target key performance indicator (KPI) level. However, in many applications, the relevant target KPI level may not be known a priori, and the user may instead wish to compare candidate models by analyzing the full trade-offs between performance and reliability achievable at test time by the models. This task, requiring the reliable estimate of the test-time KPI distributions, is made more complicated by the fact that the same data must often be used both to pre-select a subset of candidate models and to estimate their KPI distributions, causing a potential post-selection bias. In this work, we introduce post-selection distributional model evaluation (PS-DME), a general framework for statistically valid distributional model assessment after arbitrary data-dependent model pre-selection. Building on e-values, PS-DME controls post-selection false coverage rate (FCR) for the distributional KPI estimates and is proved to be more sample efficient than a baseline method based on sample splitting. Experiments on synthetic data, text-to-SQL decoding with large language models, and telecom network performance evaluation demonstrate that PS-DME enables reliable comparison of candidate configurations across a range of reliability levels, supporting the statistically reliable exploration of performance--reliability trade-offs.

Bayesian filtering and smoothing for high-dimensional nonlinear dynamical systems are fundamental yet challenging problems in many areas of science and engineering. In this work, we propose AFSF, a unified amortized framework for filtering and smoothing with conditional normalizing flows. The core idea is to encode each observation history into a fixed-dimensional summary statistic and use this shared representation to learn both a forward flow for the filtering distribution and a backward flow for the backward transition kernel. Specifically, a recurrent encoder maps each observation history to a fixed-dimensional summary statistic whose dimension does not depend on the length of the time series. Conditioned on this shared summary statistic, the forward flow approximates the filtering distribution, while the backward flow approximates the backward transition kernel. The smoothing distribution over an entire trajectory is then recovered by combining the terminal filtering distribution with the learned backward flow through the standard backward recursion. By learning the underlying temporal evolution structure, AFSF also supports extrapolation beyond the training horizon. Moreover, by coupling the two flows through shared summary statistics, AFSF induces an implicit regularization across latent state trajectories and improves trajectory-level smoothing. In addition, we develop a flow-based particle filtering variant that provides an alternative filtering procedure and enables ESS-based diagnostics when explicit model factors are available. Numerical experiments demonstrate that AFSF provides accurate approximations of both filtering distributions and smoothing paths.