infectious disease
Chilean mummies prove Europeans brought smallpox to the Americas
The 500-year-old smallpox DNA is the oldest ever found in the Americas. More information Adding us as a Preferred Source in Google by using this link indicates that you would like to see more of our content in Google News results. Smallpox killed 300-500 people during the 20th century. Breakthroughs, discoveries, and DIY tips sent six days a week. By signing up, you confirm you are 16+, will receive newsletters and promotional content and agree to our Terms of Use and acknowledge the data practices in our Privacy Policy .
The World Cup could be a superspreader event: Experts warn the tournament will have the 'perfect conditions' for infectious diseases - including Ebola, Covid-19, and STIs
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Learning from Neighbors with PHIBP: Predicting Infectious Disease Dynamics in Data-Sparse Environments
Fong, Edwin, James, Lancelot F., Lee, Juho
Modeling sparse count data, which arise across numerous scientific fields, presents significant statistical challenges. This chapter addresses these challenges in the context of infectious disease prediction, with a focus on predicting outbreaks in geographic regions that have historically reported zero cases. To this end, we present the detailed computational framework and experimental application of the Poisson Hierarchical Indian Buffet Process (PHIBP), with demonstrated success in handling sparse count data in microbiome and ecological studies. The PHIBP's architecture, grounded in the concept of absolute abundance, systematically borrows statistical strength from related regions and circumvents the known sensitivities of relative-rate methods to zero counts. Through a series of experiments on infectious disease data, we show that this principled approach provides a robust foundation for generating coherent predictive distributions and for the effective use of comparative measures such as alpha and beta diversity. The chapter's emphasis on algorithmic implementation and experimental results confirms that this unified framework delivers both accurate outbreak predictions and meaningful epidemiological insights in data-sparse settings.
Artificial Intelligence Applications in Horizon Scanning for Infectious Diseases
Miles, Ian, Wakimoto, Mayumi, Meira, Wagner Jr., Paula, Daniela, Ticiane, Daylene, Rosa, Bruno, Biddulph, Jane, Georgiou, Stelios, Ermida, Valdir
This review explores the integration of Artificial Intelligence into Horizon Scanning, focusing on identifying and responding to emerging threats and opportunities linked to Infectious Diseases. We examine how AI tools can enhance signal detection, data monitoring, scenario analysis, and decision support. We also address the risks associated with AI adoption and propose strategies for effective implementation and governance. The findings contribute to the growing body of Foresight literature by demonstrating the potential and limitations of AI in Public Health preparedness.
Integrating Spatiotemporal Features in LSTM for Spatially Informed COVID-19 Hospitalization Forecasting
Wang, Zhongying, Ngo, Thoai D., Zoraghein, Hamidreza, Lucas, Benjamin, Karimzadeh, Morteza
Despite the end of the pandemic phase and declining mortality rates, COVID-19 remains a significant global health concern. According to the Centers for Disease Control and Prevention (CDC) COVID-19 Dashboard, the disease exhibited a peak weekly test positivity of 18% in the U.S. in 2024. Although the recorded hospitalization rate of 4.8 per 10,000 population on August 10, 2024, may appear comparatively low, it underscores the continuing impact of the disease. According to communications received from the CDC, hospitals are mandated to report COVID-19 hospitalizations again starting in mid-November 2024, indicating the resurgence of the disease. The COVID-19 pandemic strained healthcare resources and overloaded hospitals, exacerbating the dramatic loss of human life. SARS-CoV-2 spreads rapidly, causing severe complications due to its high reproduction rate, the ability to spread via asymptomatic individuals, the prevalence of close-contact settings in densely populated areas, continual mutation into more transmissible variants, and the inconsistent application of preventive public health measures across the U.S. As a result, the demand for travel nurses surged during the pandemic, aligning with shifts in COVID-19 infection hotspots (Cole et al. 2021, Longyear et al. 2020). This was partially a geospatial problem related to the timely allocation of limited human and medical resources. Reliable geographic forecasting of COVID-19 hospital admissions could have alleviated this burden through policy-relevant decision-making and proactive allocation of resources in regional hotspots (i.e.
Unifying Physics- and Data-Driven Modeling via Novel Causal Spatiotemporal Graph Neural Network for Interpretable Epidemic Forecasting
Han, Shuai, Stelz, Lukas, Sokolowski, Thomas R., Zhou, Kai, Stรถcker, Horst
Accurate epidemic forecasting is crucial for effective disease control and prevention. Traditional compartmental models often struggle to estimate temporally and spatially varying epidemiological parameters, while deep learning models typically overlook disease transmission dynamics and lack interpretability in the epidemiological context. To address these limitations, we propose a novel Causal Spatiotemporal Graph Neural Network (CSTGNN), a hybrid framework that integrates a Spatio-Contact SIR model with Graph Neural Networks (GNNs) to capture the spatiotemporal propagation of epidemics. Inter-regional human mobility exhibits continuous and smooth spatiotemporal patterns, leading to adjacent graph structures that share underlying mobility dynamics. To model these dynamics, we employ an adaptive static connectivity graph to represent the stable components of human mobility and utilize a temporal dynamics model to capture fluctuations within these patterns. By integrating the adaptive static connectivity graph with the temporal dynamics graph, we construct a dynamic graph that encapsulates the comprehensive properties of human mobility networks. Additionally, to capture temporal trends and variations in infectious disease spread, we introduce a temporal decomposition model to handle temporal dependence. This model is then integrated with a dynamic graph convolutional network for epidemic forecasting. We validate our model using real-world datasets at the provincial level in China and the state level in Germany. Extensive studies demonstrate that our method effectively models the spatiotemporal dynamics of infectious diseases, providing a valuable tool for forecasting and intervention strategies. Furthermore, analysis of the learned parameters offers insights into disease transmission mechanisms, enhancing the interpretability and practical applicability of our model.
A data augmentation strategy for deep neural networks with application to epidemic modelling
Awais, Muhammad, Ali, Abu Sayfan, Dimarco, Giacomo, Ferrarese, Federica, Pareschi, Lorenzo
In this work, we integrate the predictive capabilities of compartmental disease dynamics models with machine learning ability to analyze complex, high-dimensional data and uncover patterns that conventional models may overlook. Specifically, we present a proof of concept demonstrating the application of data-driven methods and deep neural networks to a recently introduced SIR-type model with social features, including a saturated incidence rate, to improve epidemic prediction and forecasting. Our results show that a robust data augmentation strategy trough suitable data-driven models can improve the reliability of Feed-Forward Neural Networks (FNNs) and Nonlinear Autoregressive Networks (NARs), making them viable alternatives to Physics-Informed Neural Networks (PINNs). This approach enhances the ability to handle nonlinear dynamics and offers scalable, data-driven solutions for epidemic forecasting, prioritizing predictive accuracy over the constraints of physics-based models. Numerical simulations of the post-lockdown phase of the COVID-19 epidemic in Italy and Spain validate our methodology.
Deep Neural Network-Based Prediction of B-Cell Epitopes for SARS-CoV and SARS-CoV-2: Enhancing Vaccine Design through Machine Learning
Shi, Xinyu, Tao, Yixin, Lin, Shih-Chi
The accurate prediction of B-cell epitopes is critical for guiding vaccine development against infectious diseases, including SARS and COVID-19. This study explores the use of a deep neural network (DNN) model to predict B-cell epitopes for SARS-CoVandSARS-CoV-2,leveraging a dataset that incorporates essential protein and peptide features. Traditional sequence-based methods often struggle with large, complex datasets, but deep learning offers promising improvements in predictive accuracy. Our model employs regularization techniques, such as dropout and early stopping, to enhance generalization, while also analyzing key features, including isoelectric point and aromaticity, that influence epitope recognition. Results indicate an overall accuracy of 82% in predicting COVID-19 negative and positive cases, with room for improvement in detecting positive samples. This research demonstrates the applicability of deep learning in epitope mapping, suggesting that such approaches can enhance the speed and precision of vaccine design for emerging pathogens. Future work could incorporate structural data and diverse viral strains to further refine prediction capabilities.