ica
Isolating Nonlinear Independent Sources in fMRI with $β$-TCVAE Models
Li, Qiang, Yu, Shujian, Malo, Jesus, Liu, Jingyu, Adali, Tülay, Calhoun, Vince D.
Learning meaningful latent representations from nonlinear fMRI data remains a fundamental challenge in neuroimaging analysis. Traditional independent component analysis, widely used due to its ability to estimate interpretable functional brain networks, relies on a linear mixing assumption for latent sources, limiting its ability to capture the inherently nonlinear and complex organization of brain dynamics. More recently, deep representation learning methods have emerged as promising alternatives for modeling nonlinear latent structure. However, many of these approaches have been evaluated primarily on simulated datasets or natural image benchmarks, with comparatively limited validation on real-world neuroimaging data such as fMRI. In this work, we are motivated by the $β$-TCVAE (Total Correlation Variational Autoencoder), a refinement of the $β$-VAE framework for learning latent representations without introducing additional hyperparameters during training. We adapt and modify this model to fMRI data for nonlinear source disentanglement, aiming to separate mixed spatial and temporal brain signals into interpretable components. We show that the $β$-TCVAE framework can recover meaningful nonlinear spatial components with biological relevance, including well-established intrinsic connectivity networks such as the default mode network. Furthermore, we evaluate the learned representations using functional network connectivity, showing that the latent structure captures coherent and interpretable brain organization patterns. This study provides a pilot investigation that bridges nonlinear representation learning and fMRI analysis.
Reservoir Subspace Injection for Online ICA under Top-n Whitening
Xiao, Wenjun, Bi, Yuda, Calhoun, Vince D
Reservoir expansion can improve online independent component analysis (ICA) under nonlinear mixing, yet top-$n$ whitening may discard injected features. We formalize this bottleneck as \emph{reservoir subspace injection} (RSI): injected features help only if they enter the retained eigenspace without displacing passthrough directions. RSI diagnostics (IER, SSO, $ρ_x$) identify a failure mode in our top-$n$ setting: stronger injection increases IER but crowds out passthrough energy ($ρ_x: 1.00\!\rightarrow\!0.77$), degrading SI-SDR by up to $2.2$\,dB. A guarded RSI controller preserves passthrough retention and recovers mean performance to within $0.1$\,dB of baseline $1/N$ scaling. With passthrough preserved, RE-OICA improves over vanilla online ICA by $+1.7$\,dB under nonlinear mixing and achieves positive SI-SDR$_{\mathrm{sc}}$ on the tested super-Gaussian benchmark ($+0.6$\,dB).
Self-sufficient Independent Component Analysis via KL Minimizing Flows
We study the problem of learning disentangled signals from data using non-linear Independent Component Analysis (ICA). Motivated by advances in self-supervised learning, we propose to learn self-sufficient signals: A recovered signal should be able to reconstruct a missing value of its own from all remaining components without relying on any other signals. We formulate this problem as the minimization of a conditional KL divergence. Compared to traditional maximum likelihood estimation, our algorithm is prior-free and likelihood-free, meaning that we do not need to impose any prior on the original signals or any observational model, which often restricts the model's flexibility. To tackle the KL divergence minimization problem, we propose a sequential algorithm that reduces the KL divergence and learns an optimal de-mixing flow model at each iteration. This approach completely avoids the unstable adversarial training, a common issue in minimizing the KL divergence. Experiments on toy and real-world datasets show the effectiveness of our method.