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LONGQAEVAL: Designing Reliable Evaluations of Long-Form Clinical QA under Resource Constraints
Bologna, Federica, Pan, Tiffany, Wilkens, Matthew, Guo, Yue, Wang, Lucy Lu
Evaluating long-form clinical question answering (QA) systems is resource-intensive and challenging: accurate judgments require medical expertise and achieving consistent human judgments over long-form text is difficult. We introduce LongQAEval, an evaluation framework and set of evaluation recommendations for limited-resource and high-expertise settings. Based on physician annotations of 300 real patient questions answered by physicians and LLMs, we compare coarse answer-level versus fine-grained sentence-level evaluation over the dimensions of correctness, relevance, and safety. We find that inter-annotator agreement (IAA) varies by dimension: fine-grained annotation improves agreement on correctness, coarse improves agreement on relevance, and judgments on safety remain inconsistent. Additionally, annotating only a small subset of sentences can provide reliability comparable to coarse annotations, reducing cost and effort.
Classification of HI Galaxy Profiles Using Unsupervised Learning and Convolutional Neural Networks: A Comparative Analysis and Methodological Cases of Studies
Jaimes-Illanes, Gabriel, Parra-Royon, Manuel, Darriba-Pol, Laura, Moldón, Javier, Sorgho, Amidou, Sánchez-Expósito, Susana, Garrido-Sánchez, Julián, Verdes-Montenegro, Lourdes
Hydrogen, the most abundant element in the universe, is crucial for understanding galaxy formation and evolution. The 21 cm neutral atomic hydrogen - HI spectral line maps the gas kinematics within galaxies, providing key insights into interactions, galactic structure, and star formation processes. With new radio instruments, the volume and complexity of data is increasing. To analyze and classify integrated HI spectral profiles in a efficient way, this work presents a framework that integrates Machine Learning techniques, combining unsupervised methods and CNNs. To this end, we apply our framework to a selected subsample of 318 spectral HI profiles of the CIG and 30.780 profiles from the Arecibo Legacy Fast ALFA Survey catalogue. Data pre-processing involved the Busyfit package and iterative fitting with polynomial, Gaussian, and double-Lorentzian models. Clustering methods, including K-means, spectral clustering, DBSCAN, and agglomerative clustering, were used for feature extraction and to bootstrap classification we applied K-NN, SVM, and Random Forest classifiers, optimizing accuracy with CNN. Additionally, we introduced a 2D model of the profiles to enhance classification by adding dimensionality to the data. Three 2D models were generated based on transformations and normalised versions to quantify the level of asymmetry. These methods were tested in a previous analytical classification study conducted by the Analysis of the Interstellar Medium in Isolated Galaxies group. This approach enhances classification accuracy and aims to establish a methodology that could be applied to data analysis in future surveys conducted with the Square Kilometre Array (SKA), currently under construction. All materials, code, and models have been made publicly available in an open-access repository, adhering to FAIR principles.
CACER: Clinical Concept Annotations for Cancer Events and Relations
Fu, Yujuan, Ramachandran, Giridhar Kaushik, Halwani, Ahmad, McInnes, Bridget T., Xia, Fei, Lybarger, Kevin, Yetisgen, Meliha, Uzuner, Özlem
Clinical notes contain unstructured representations of patient histories, including the relationships between medical problems and prescription drugs. To investigate the relationship between cancer drugs and their associated symptom burden, we extract structured, semantic representations of medical problem and drug information from the clinical narratives of oncology notes. We present Clinical Concept Annotations for Cancer Events and Relations (CACER), a novel corpus with fine-grained annotations for over 48,000 medical problems and drug events and 10,000 drug-problem and problem-problem relations. Leveraging CACER, we develop and evaluate transformer-based information extraction (IE) models such as BERT, Flan-T5, Llama3, and GPT-4 using fine-tuning and in-context learning (ICL). In event extraction, the fine-tuned BERT and Llama3 models achieved the highest performance at 88.2-88.0 F1, which is comparable to the inter-annotator agreement (IAA) of 88.4 F1. In relation extraction, the fine-tuned BERT, Flan-T5, and Llama3 achieved the highest performance at 61.8-65.3 F1. GPT-4 with ICL achieved the worst performance across both tasks. The fine-tuned models significantly outperformed GPT-4 in ICL, highlighting the importance of annotated training data and model optimization. Furthermore, the BERT models performed similarly to Llama3. For our task, LLMs offer no performance advantage over the smaller BERT models. The results emphasize the need for annotated training data to optimize models. Multiple fine-tuned transformer models achieved performance comparable to IAA for several extraction tasks.
Redefining Automotive Radar Imaging: A Domain-Informed 1D Deep Learning Approach for High-Resolution and Efficient Performance
Zheng, Ruxin, Sun, Shunqiao, Caesar, Holger, Chen, Honglei, Li, Jian
Millimeter-wave (mmWave) radars are indispensable for perception tasks of autonomous vehicles, thanks to their resilience in challenging weather conditions. Yet, their deployment is often limited by insufficient spatial resolution for precise semantic scene interpretation. Classical super-resolution techniques adapted from optical imaging inadequately address the distinct characteristics of radar signal data. In response, our study redefines radar imaging super-resolution as a one-dimensional (1D) signal super-resolution spectra estimation problem by harnessing the radar signal processing domain knowledge, introducing innovative data normalization and a domain-informed signal-to-noise ratio (SNR)-guided loss function. Our tailored deep learning network for automotive radar imaging exhibits remarkable scalability, parameter efficiency and fast inference speed, alongside enhanced performance in terms of radar imaging quality and resolution. Extensive testing confirms that our SR-SPECNet sets a new benchmark in producing high-resolution radar range-azimuth images, outperforming existing methods across varied antenna configurations and dataset sizes. Source code and new radar dataset will be made publicly available online.
Q-Align: Teaching LMMs for Visual Scoring via Discrete Text-Defined Levels
Wu, Haoning, Zhang, Zicheng, Zhang, Weixia, Chen, Chaofeng, Liao, Liang, Li, Chunyi, Gao, Yixuan, Wang, Annan, Zhang, Erli, Sun, Wenxiu, Yan, Qiong, Min, Xiongkuo, Zhai, Guangtao, Lin, Weisi
The explosion of visual content available online underscores the requirement for an accurate machine assessor to robustly evaluate scores across diverse types of visual contents. While recent studies have demonstrated the exceptional potentials of large multi-modality models (LMMs) on a wide range of related fields, in this work, we explore how to teach them for visual rating aligned with human opinions. Observing that human raters only learn and judge discrete text-defined levels in subjective studies, we propose to emulate this subjective process and teach LMMs with text-defined rating levels instead of scores. The proposed Q-Align achieves state-of-the-art performance on image quality assessment (IQA), image aesthetic assessment (IAA), as well as video quality assessment (VQA) tasks under the original LMM structure. With the syllabus, we further unify the three tasks into one model, termed the OneAlign. In our experiments, we demonstrate the advantage of the discrete-level-based syllabus over direct-score-based variants for LMMs. Our code and the pre-trained weights are released at https://github.com/Q-Future/Q-Align.
LLM-in-the-loop: Leveraging Large Language Model for Thematic Analysis
Dai, Shih-Chieh, Xiong, Aiping, Ku, Lun-Wei
Thematic analysis (TA) has been widely used for analyzing qualitative data in many disciplines and fields. To ensure reliable analysis, the same piece of data is typically assigned to at least two human coders. Moreover, to produce meaningful and useful analysis, human coders develop and deepen their data interpretation and coding over multiple iterations, making TA labor-intensive and time-consuming. Recently the emerging field of large language models (LLMs) research has shown that LLMs have the potential replicate human-like behavior in various tasks: in particular, LLMs outperform crowd workers on text-annotation tasks, suggesting an opportunity to leverage LLMs on TA. We propose a human-LLM collaboration framework (i.e., LLM-in-the-loop) to conduct TA with in-context learning (ICL). This framework provides the prompt to frame discussions with a LLM (e.g., GPT-3.5) to generate the final codebook for TA. We demonstrate the utility of this framework using survey datasets on the aspects of the music listening experience and the usage of a password manager. Results of the two case studies show that the proposed framework yields similar coding quality to that of human coders but reduces TA's labor and time demands.
Transcending Traditional Boundaries: Leveraging Inter-Annotator Agreement (IAA) for Enhancing Data Management Operations (DMOps)
Kim, Damrin, Kim, NamHyeok, Park, Chanjun, Kim, Harksoo
This paper presents a novel approach of leveraging Inter-Annotator Agreement (IAA), traditionally used for assessing labeling consistency, to optimize Data Management Operations (DMOps). We advocate for the use of IAA in predicting the labeling quality of individual annotators, leading to cost and time efficiency in data production. Additionally, our work highlights the potential of IAA in forecasting document difficulty, thereby boosting the data construction process's overall efficiency. This research underscores IAA's broader application potential in data-driven research optimization and holds significant implications for large-scale data projects prioritizing efficiency, cost reduction, and high-quality data.
Inter-Annotator Agreement in the Wild: Uncovering Its Emerging Roles and Considerations in Real-World Scenarios
Inter-Annotator Agreement (IAA) is commonly used as a measure of label consistency in natural language processing tasks. However, in real-world scenarios, IAA has various roles and implications beyond its traditional usage. In this paper, we not only consider IAA as a measure of consistency but also as a versatile tool that can be effectively utilized in practical applications. Moreover, we discuss various considerations and potential concerns when applying IAA and suggest strategies for effectively navigating these challenges.
Introspective Action Advising for Interpretable Transfer Learning
Campbell, Joseph, Guo, Yue, Xie, Fiona, Stepputtis, Simon, Sycara, Katia
Transfer learning can be applied in deep reinforcement learning to accelerate the training of a policy in a target task by transferring knowledge from a policy learned in a related source task. This is commonly achieved by copying pretrained weights from the source policy to the target policy prior to training, under the constraint that they use the same model architecture. However, not only does this require a robust representation learned over a wide distribution of states -- often failing to transfer between specialist models trained over single tasks -- but it is largely uninterpretable and provides little indication of what knowledge is transferred. In this work, we propose an alternative approach to transfer learning between tasks based on action advising, in which a teacher trained in a source task actively guides a student's exploration in a target task. Through introspection, the teacher is capable of identifying when advice is beneficial to the student and should be given, and when it is not. Our approach allows knowledge transfer between policies agnostic of the underlying representations, and we empirically show that this leads to improved convergence rates in Gridworld and Atari environments while providing insight into what knowledge is transferred.
A new interval-based aggregation approach based on bagging and Interval Agreement Approach (IAA) in ensemble learning
Maadia, Mansoureh, Aickelin, Uwe, Khorshidi, Hadi Akbarzadeh
The main aim in ensemble learning is using multiple individual classifiers outputs rather than one classifier output to aggregate them for more accurate classification. Generating an ensemble classifier generally is composed of three steps: selecting the base classifier, applying a sampling strategy to generate different individual classifiers and aggregation the classifiers outputs. This paper focuses on the classifiers outputs aggregation step and presents a new interval-based aggregation modeling using bagging resampling approach and Interval Agreement Approach (IAA) in ensemble learning. IAA is an interesting and practical aggregation approach in decision making which was introduced to combine decision makers opinions when they present their opinions by intervals. In this paper, in addition to implementing a new aggregation approach in ensemble learning, we designed some experiments to encourage researchers to use interval modeling in ensemble learning because it preserves more uncertainty and this leads to more accurate classification. For this purpose, we compared the results of implementing the proposed method to the majority vote as the most common and successful aggregation function in the literature on 10 medical data sets to show the better performance of the interval modeling and the proposed interval-based aggregation function in binary classification when it comes to ensemble learning. The results confirm the good performance of our proposed approach.