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Appendix

Neural Information Processing Systems

As shown in Figure 6, node-viewGTransformer contains nodedyMPN, which maintains hidden states of nodeshv,v V and performs the message passing over nodes.


Self-SupervisedGraphTransformeronLarge-Scale MolecularData

Neural Information Processing Systems

Nevertheless, two issues impede the usage of GNNs in real scenarios: (1)insufficient labeled molecules forsupervised training; (2)poorgeneralization capability to new-synthesized molecules.