This paper combines deep learning techniques for species detection, 3D model fitting, and metric learning in one pipeline to perform individual animal identification from photographs by exploiting unique coat patterns. This is the first work to attempt this and, compared to traditional 2D bounding box or segmentation based CNN identification pipelines, the approach provides effective and explicit view-point normalisation and allows for a straight forward visualisation of the learned biometric population space. Note that due to the use of metric learning the pipeline is also readily applicable to open set and zero shot re-identification scenarios. We apply the proposed approach to individual Grevy's zebra (Equus grevyi) identification and show in a small study on the SMALST dataset that the use of 3D model fitting can indeed benefit performance. In particular, back-projected textures from 3D fitted models improve identification accuracy from 48.0% to 56.8% compared to 2D bounding box approaches for the dataset. Whilst the study is far too small accurately to estimate the full performance potential achievable in larger-scale real-world application settings and in comparisons against polished tools, our work lays the conceptual and practical foundations for a next step in animal biometrics towards deep metric learning driven, fully 3D-aware animal identification in open population settings. We publish network weights and relevant facilitating source code with this paper for full reproducibility and as inspiration for further research.

Conservationists hoping to save one of the world's most endangered animals have a new high-tech tool in their arsenal: Social media. Grevy's zebras once roamed across five countries in Africa, but their numbers have dwindled to barely 3,000 due to habitat loss and hunting. Now an online platform known as Wildbook is keeping tabs on these precious equines, by enabling volunteers take and upload photos that are then matched against zebras already in the site's database. The zebra's distinct stripes, which are as unique as fingerprints, allow them to be easily identified from among hundreds of thousands of submitted photos. Grevy's zebras once roamed across five countries in Africa.

We are losing biodiversity at an unprecedented scale and in many cases, we do not even know the basic data for the species. Traditional methods for wildlife monitoring are inadequate. Development of new computer vision tools enables the use of images as the source of information about wildlife. Social media is the rich source of wildlife images, which come with a huge bias, thus thwarting traditional population size estimate approaches. Here, we present a new framework to take into account the social media bias when using this data source to provide wildlife population size estimates. We show that, surprisingly, this is a learnable and potentially solvable problem.