Objective: To develop a fast image reconstruction method for stroke monitoring with electrical impedance tomography with image quality comparable to computationally expensive nonlinear model-based methods. Methods: A post-processing approach with graph convolutional networks is employed. Utilizing the flexibility of the graph setting, a graph U-net is trained on linear difference reconstructions from 2D simulated stroke data and applied to fully 3D images from realistic simulated and experimental data. An additional network, trained on 3D vs. 2D images, is also considered for comparison. Results: Post-processing the linear difference reconstructions through the graph U-net significantly improved the image quality, resulting in images comparable to, or better than, the time-intensive nonlinear reconstruction method (a few minutes vs. several hours). Conclusion: Pairing a fast reconstruction method, such as linear difference imaging, with post-processing through a graph U-net provided significant improvements, at a negligible computational cost. Training in the graph framework vs classic pixel-based setting (CNN) allowed the ability to train on 2D cross-sectional images and process 3D volumes providing a nearly 50x savings in data simulation costs with no noticeable loss in quality. Significance: The proposed approach of post-processing a linear difference reconstruction with the graph U-net could be a feasible approach for on-line monitoring of hemorrhagic stroke.

Machine-learned surrogate models to accelerate lengthy computer simulations are becoming increasingly important as engineers look to streamline the product design cycle. In many cases, these approaches offer the ability to predict relevant quantities throughout a geometry, but place constraints on the form of the input data. In a world of diverse data types, a preferred approach would not restrict the input to a particular structure. In this paper, we propose Topology-Agnostic Graph U-Net (TAG U-Net), a graph convolutional network that can be trained to input any mesh or graph structure and output a prediction of a target scalar field at each node. The model constructs coarsened versions of each input graph and performs a set of convolution and pooling operations to predict the node-wise outputs on the original graph. By training on a diverse set of shapes, the model can make strong predictions, even for shapes unlike those seen during training. A 3-D additive manufacturing dataset is presented, containing Laser Powder Bed Fusion simulation results for thousands of parts. The model is demonstrated on this dataset, and it performs well, predicting both 2-D and 3-D scalar fields with a median R-squared > 0.85 on test geometries. Code and datasets are available online.

This study aims to overcome the conventional deep-learning approaches based on convolutional neural networks, whose applicability to complex geometries and unstructured meshes is limited due to their inherent mesh dependency. We propose novel approaches to improve mesh-agnostic spatio-temporal prediction of transient flow fields using graph U-Nets, enabling accurate prediction on diverse mesh configurations. Key enhancements to the graph U-Net architecture, including the Gaussian mixture model convolutional operator and noise injection approaches, provide increased flexibility in modeling node dynamics: the former reduces prediction error by 95\% compared to conventional convolutional operators, while the latter improves long-term prediction robustness, resulting in an error reduction of 86\%. We also investigate transductive and inductive-learning perspectives of graph U-Nets with proposed improvements. In the transductive setting, they effectively predict quantities for unseen nodes within the trained graph. In the inductive setting, they successfully perform in mesh scenarios with different vortex-shedding periods, showing 98\% improvement in predicting the future flow fields compared to a model trained without the inductive settings. It is found that graph U-Nets without pooling operations, i.e. without reducing and restoring the node dimensionality of the graph data, perform better in inductive settings due to their ability to learn from the detailed structure of each graph. Meanwhile, we also discover that the choice of normalization technique significantly impacts graph U-Net performance.

Computational fluid dynamics (CFD) simulation is an irreplaceable modelling step in many engineering designs, but it is often computationally expensive. Some graph neural network (GNN)-based CFD methods have been proposed. However, the current methods inherit the weakness of traditional numerical simulators, as well as ignore the cell characteristics in the mesh used in the finite volume method, a common method in practical CFD applications. Specifically, the input nodes in these GNN methods have very limited information about any object immersed in the simulation domain and its surrounding environment. Also, the cell characteristics of the mesh such as cell volume, face surface area, and face centroid are not included in the message-passing operations in the GNN methods. To address these weaknesses, this work proposes two novel geometric representations: Shortest Vector (SV) and Directional Integrated Distance (DID). Extracted from the mesh, the SV and DID provide global geometry perspective to each input node, thus removing the need to collect this information through message-passing. This work also introduces the use of Finite Volume Features (FVF) in the graph convolutions as node and edge attributes, enabling its message-passing operations to adjust to different nodes. Finally, this work is the first to demonstrate how residual training, with the availability of low-resolution data, can be adopted to improve the flow field prediction accuracy. Experimental results on two datasets with five different state-of-the-art GNN methods for CFD indicate that SV, DID, FVF and residual training can effectively reduce the predictive error of current GNN-based methods by as much as 41%.

Reconstruction of tomographic images from boundary measurements requires flexibility with respect to target domains. For instance, when the system equations are modeled by partial differential equations the reconstruction is usually done on finite element (FE) meshes, allowing for flexible geometries. Thus, any processing of the obtained reconstructions should be ideally done on the FE mesh as well. For this purpose, we extend the hugely successful U-Net architecture that is limited to rectangular pixel or voxel domains to an equivalent that works flexibly on FE meshes. To achieve this, the FE mesh is converted into a graph and we formulate a graph U-Net with a new cluster pooling and unpooling on the graph that mimics the classic neighborhood based max-pooling. We demonstrate effectiveness and flexibility of the graph U-Net for improving reconstructions from electrical impedance tomographic (EIT) measurements, a nonlinear and highly ill-posed inverse problem. The performance is evaluated for simulated data and from three measurement devices with different measurement geometries and instrumentations. We successfully show that such networks can be trained with a simple two-dimensional simulated training set and generalize to very different domains, including measurements from a three-dimensional device and subsequent 3D reconstructions.