glm
Scalable inference of functional neural connectivity at submillisecond timescales
The Poisson Generalized Linear Model (GLM) is a foundational tool for analyzing neural spike train data. However, standard implementations rely on discretizing spike times into binned count data, limiting temporal resolution and scalability. Here, we develop Monte Carlo (MC) methods and polynomial approximations (PA) to the continuous-time analog of these models, and show them to be advantageous over their discrete-time counterparts. Further, we propose using a set of exponentially scaled Laguerre polynomials as an orthogonal temporal basis, which improves filter identification and yields closed-form integral solutions under the polynomial approximation. Applied to both synthetic and real spike-time data from rodent hippocampus, our methods demonstrate superior accuracy and scalability compared to traditional binned GLMs, enabling functional connectivity inference in large-scale neural recordings that are temporally precise on the order of synaptic dynamical timescales and in agreement with known anatomical properties of hippocampal subregions. We provide open-source implementations of both MC and PA estimators, optimized for GPU acceleration, to facilitate adoption in the neuroscience community1.
Scaled Least Squares Estimator for GLMs in Large-Scale Problems
Murat A. Erdogdu, Lee H. Dicker, Mohsen Bayati
We study the problem of efficiently estimating the coefficients of generalized linear models (GLMs) in the large-scale setting where the number of observations n is much larger than the number of predictors p, i.e. n p 1. We show that in GLMs with random (not necessarily Gaussian) design, the GLM coefficients are approximately proportional to the corresponding ordinary least squares (OLS) coefficients. Using this relation, we design an algorithm that achieves the same accuracy as the maximum likelihood estimator (MLE) through iterations that attain up to a cubic convergence rate, and that are cheaper than any batch optimization algorithm by at least a factor of O(p). We provide theoretical guarantees for our algorithm, and analyze the convergence behavior in terms of data dimensions. Finally, we demonstrate the performance of our algorithm through extensive numerical studies on large-scale real and synthetic datasets, and show that it achieves the highest performance compared to several other widely used optimization algorithms.
Scaled Least Squares Estimator for GLMs in Large-Scale Problems
We study the problem of efficiently estimating the coefficients of generalized linear models (GLMs) in the large-scale setting where the number of observations $n$ is much larger than the number of predictors $p$, i.e. $n\gg p \gg 1$. We show that in GLMs with random (not necessarily Gaussian) design, the GLM coefficients are approximately proportional to the corresponding ordinary least squares (OLS) coefficients. Using this relation, we design an algorithm that achieves the same accuracy as the maximum likelihood estimator (MLE) through iterations that attain up to a cubic convergence rate, and that are cheaper than any batch optimization algorithm by at least a factor of $\mathcal{O}(p)$. We provide theoretical guarantees for our algorithm, and analyze the convergence behavior in terms of data dimensions.
A Omitted Proofs
Taking = p / gives the desired claim. Claim 2.7, we know that the multicalibration violation for The inequalities follow by Holder's inequality and the assumed bound on the weight of Recall that Cov[ y, z ]= E [ yz ] E [ y ] E [ z ] . Here, we give a high-level overview of the MCBoost algorithm of [ 20 ] and weak agnostic learning. Algorithm 2 MCBoost Parameters: hypothesis class C and > 0 Given: Dataset S sampled from D Initialize: p ( x) 1 / 2 . By Lemma 3.8, we know that In this Appendix, we give a full account of the definitions and results stated in Section 4 .
Basic Inequalities for First-Order Optimization with Applications to Statistical Risk Analysis
Paik, Seunghoon, Zhou, Kangjie, Telgarsky, Matus, Tibshirani, Ryan J.
We introduce \textit{basic inequalities} for first-order iterative optimization algorithms, forming a simple and versatile framework that connects implicit and explicit regularization. While related inequalities appear in the literature, we isolate and highlight a specific form and develop it as a well-rounded tool for statistical analysis. Let $f$ denote the objective function to be optimized. Given a first-order iterative algorithm initialized at $θ_0$ with current iterate $θ_T$, the basic inequality upper bounds $f(θ_T)-f(z)$ for any reference point $z$ in terms of the accumulated step sizes and the distances between $θ_0$, $θ_T$, and $z$. The bound translates the number of iterations into an effective regularization coefficient in the loss function. We demonstrate this framework through analyses of training dynamics and prediction risk bounds. In addition to revisiting and refining known results on gradient descent, we provide new results for mirror descent with Bregman divergence projection, for generalized linear models trained by gradient descent and exponentiated gradient descent, and for randomized predictors. We illustrate and supplement these theoretical findings with experiments on generalized linear models.