Do the main claims made in the abstract and introduction accurately reflect the paper's Did you discuss any potential negative societal impacts of your work? If you ran experiments... (a) Did you include the code, data, and instructions needed to reproduce the main experimental results (either in the supplemental material or as a URL)? [Y es] Code is available Did you specify all the training details (e.g., data splits, hyperparameters, how they Did you report error bars (e.g., with respect to the random seed after running experiments multiple times)?

Identifying disease phenotypes from electronic health records (EHRs) is critical for numerous secondary uses. Manually encoding physician knowledge into rules is particularly challenging for rare diseases due to inadequate EHR coding, necessitating review of clinical notes. Large language models (LLMs) offer promise in text understanding but may not efficiently handle real-world clinical documentation. We propose a zero-shot LLM-based method enriched by retrieval-augmented generation and MapReduce, which pre-identifies disease-related text snippets to be used in parallel as queries for the LLM to establish diagnosis. We show that this method as applied to pulmonary hypertension (PH), a rare disease characterized by elevated arterial pressures in the lungs, significantly outperforms physician logic rules ($F_1$ score of 0.62 vs. 0.75). This method has the potential to enhance rare disease cohort identification, expanding the scope of robust clinical research and care gap identification.

This paper explores the task of Temporal Video Grounding (TVG) where, given an untrimmed video and a natural language sentence query, the goal is to recognize and determine temporal boundaries of action instances in the video described by the query. Recent works tackled this task by improving query inputs with large pre-trained language models (PLM) at the cost of more expensive training. However, the effects of this integration are unclear, as these works also propose improvements in the visual inputs. Therefore, this paper studies the effects of PLMs in TVG and assesses the applicability of parameter-efficient training with NLP adapters. We couple popular PLMs with a selection of existing approaches and test different adapters to reduce the impact of the additional parameters. Our results on three challenging datasets show that, without changing the visual inputs, TVG models greatly benefited from the PLM integration and fine-tuning, stressing the importance of sentence query representation in this task. Furthermore, NLP adapters were an effective alternative to full fine-tuning, even though they were not tailored to our task, allowing PLM integration in larger TVG models and delivering results comparable to SOTA models. Finally, our results shed light on which adapters work best in different scenarios.

This paper considers doing quantile regression on censored data using neural networks (NNs). This adds to the survival analysis toolkit by allowing direct prediction of the target variable, along with a distribution-free characterisation of uncertainty, using a flexible function approximator. We begin by showing how an algorithm popular in linear models can be applied to NNs. However, the resulting procedure is inefficient, requiring sequential optimisation of an individual NN at each desired quantile. Our major contribution is a novel algorithm that simultaneously optimises a grid of quantiles output by a single NN. To offer theoretical insight into our algorithm, we show firstly that it can be interpreted as a form of expectation-maximisation, and secondly that it exhibits a desirable `self-correcting' property. Experimentally, the algorithm produces quantiles that are better calibrated than existing methods on 10 out of 12 real datasets.

A structured variable selection problem is considered in which the covariates, divided into predefined groups, activate according to sparse patterns with few nonzero entries per group. Capitalizing on the concept of atomic norm, a composite norm can be properly designed to promote such exclusive group sparsity patterns. The resulting norm lends itself to efficient and flexible regularized optimization algorithms for support recovery, like the proximal algorithm. Moreover, an active set algorithm is proposed that builds the solution by successively including structure atoms into the estimated support. It is also shown that such an algorithm can be tailored to match more rigid structures than plain exclusive group sparsity. Asymptotic consistency analysis (with both the number of parameters as well as the number of groups growing with the observation size) establishes the effectiveness of the proposed solution in terms of signed support recovery under conventional assumptions.

The automated construction of coarse-grained models represents a pivotal component in computer simulation of physical systems and is a key enabler in various analysis and design tasks related to uncertainty quantification. Pertinent methods are severely inhibited by the high-dimension of the parametric input and the limited number of training input/output pairs that can be generated when computationally demanding forward models are considered. Such cases are frequently encountered in the modeling of random heterogeneous media where the scale of the microstructure necessitates the use of high-dimensional random vectors and very fine discretizations of the governing equations. The present paper proposes a probabilistic Machine Learning framework that is capable of operating in the presence of Small Data by exploiting aspects of the physical structure of the problem as well as contextual knowledge. As a result, it can perform comparably well under extrapolative conditions. It unifies the tasks of dimensionality and model-order reduction through an encoder-decoder scheme that simultaneously identifies a sparse set of salient lower-dimensional microstructural features and calibrates an inexpensive, coarse-grained model which is predictive of the output. Information loss is accounted for and quantified in the form of probabilistic predictive estimates. The learning engine is based on Stochastic Variational Inference. We demonstrate how the variational objectives can be used not only to train the coarse-grained model, but also to suggest refinements that lead to improved predictions.