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Supplementary for Neural Methods for Point-wise Dependency Estimation
In this section, we shall show detailed derivations for the point-wise dependency estimation methods. Four approaches are discussed: Variational Bounds of Mutual Information, Density Matching, Probabilistic Classifier, and Density-Ratio Fitting. For convenience, we define โฆ = X Y. We have PX,Y and PXPY (can also be written as PX PY) be the probability measures over ฯ algebras over โฆ with their probability densities being the Radon-Nikodym derivatives (i.e., p(x,y) = dPX,Y/dยต and p(x)p(y) = dPXPY/dยตwith ยตbeing the Lebesgue measure). These estimators have the logarithm of point-wise dependency (PMI) as the intermediate product, which we will show in the following. We denote Mbe any class of functions m: โฆ R. Proposition 1 (INWJ and its neural estimation, restating Nguyen-Wainwright-Jordan bound [5, 18]).
Supplementaryfor NeuralMethodsforPoint-wiseDependencyEstimation
Four approaches are discussed: Variational Bounds of Mutual Information, Density Matching, ProbabilisticClassifier,andDensity-RatioFitting. Proposition3(IJS and its neural estimation, restating Jensen-Shannon bound with f-GAN objective [22]). We adopt the "concatenate critic" design [20, 22, 23] for our neural network parametrized function. NotethatProbabilistic Classifier method applies sigmoid function to the outputs to ensure probabilistic outputs. To proceed, it suffices if we could provide an upper bound forPrS(|lS(ฮธk)| ฮต/2).
Ensembling classification models based on phalanxes of variables with applications in drug discovery
Tomal, Jabed H., Welch, William J., Zamar, Ruben H.
Statistical detection of a rare class of objects in a two-class classification problem can pose several challenges. Because the class of interest is rare in the training data, there is relatively little information in the known class response labels for model building. At the same time the available explanatory variables are often moderately high dimensional. In the four assays of our drug-discovery application, compounds are active or not against a specific biological target, such as lung cancer tumor cells, and active compounds are rare. Several sets of chemical descriptor variables from computational chemistry are available to classify the active versus inactive class; each can have up to thousands of variables characterizing molecular structure of the compounds. The statistical challenge is to make use of the richness of the explanatory variables in the presence of scant response information. Our algorithm divides the explanatory variables into subsets adaptively and passes each subset to a base classifier. The various base classifiers are then ensembled to produce one model to rank new objects by their estimated probabilities of belonging to the rare class of interest. The essence of the algorithm is to choose the subsets such that variables in the same group work well together; we call such groups phalanxes.