Neural Information Processing Systems http://nips.cc/

The McKean-Vlasov equation (MVE) describes the collective behavior of particles subject to drift, diffusion, and mean-field interaction. In physical systems, the interaction term can be singular, i.e. it diverges when two particles collide. Notable examples of such interactions include the Coulomb interaction, fundamental in plasma physics, and the Biot-Savart interaction, present in the vorticity formulation of the 2D Navier-Stokes equation (NSE) in fluid dynamics. Solving MVEs that involve singular interaction kernels presents a significant challenge, especially when aiming to provide rigorous theoretical guarantees. In this work, we propose a novel approach based on the concept of entropy dissipation in the underlying system.

The evolution of biological sequences, such as proteins or DNAs, is driven by the three basic edit operations: substitution, insertion, and deletion.

The McKean-Vlasov equation (MVE) describes the collective behavior of particles subject to drift, diffusion, and mean-field interaction. In physical systems, the interaction term can be singular, i.e. it diverges when two particles collide. Notable examples of such interactions include the Coulomb interaction, fundamental in plasma physics, and the Biot-Savart interaction, present in the vorticity formulation of the 2D Navier-Stokes equation (NSE) in fluid dynamics. Solving MVEs that involve singular interaction kernels presents a significant challenge, especially when aiming to provide rigorous theoretical guarantees. In this work, we propose a novel approach based on the concept of entropy dissipation in the underlying system.

It is a bit unfortunate that the authors could not find a more scalable variant of EINN, since for the larger datasets EINN was not even used because it was too slow to run, so it just came down to running a plain cnn. It's also unfortunate that the improvements due to EINN are so minor - and leads one to wonder whether this idea is useful in practice. However, the novelty of introducing a new idea like this makes it, in my opinions, worth publishing, despite not having stunning results. It seemed like the EINN could have been slightly better described. Rather than include Algorithms 2 and 3, which are barely referenced in the text, and seem to be just the result of applying chain rule to Alg. 1 (unless i'm missing something), it would be good to have an algorithm which explicitely spells out the function of an einn layer.

We introduce EINNs, a framework crafted for epidemic forecasting that builds upon the theoretical grounds provided by mechanistic models as well as the data-driven expressibility afforded by AI models, and their capabilities to ingest heterogeneous information. Although neural forecasting models have been successful in multiple tasks, predictions well-correlated with epidemic trends and long-term predictions remain open challenges. Epidemiological ODE models contain mechanisms that can guide us in these two tasks; however, they have limited capability of ingesting data sources and modeling composite signals. Thus, we propose to leverage work in physics-informed neural networks to learn latent epidemic dynamics and transfer relevant knowledge to another neural network which ingests multiple data sources and has more appropriate inductive bias. In contrast with previous work, we do not assume the observability of complete dynamics and do not need to numerically solve the ODE equations during training. Our thorough experiments on all US states and HHS regions for COVID-19 and influenza forecasting showcase the clear benefits of our approach in both short-term and long-term forecasting as well as in learning the mechanistic dynamics over other non-trivial alternatives.

The evolution of biological sequences, such as proteins or DNAs, is driven by the three basic edit operations: substitution, insertion, and deletion. Motivated by the recent progress of neural network models for biological tasks, we implement two neural network architectures that can treat such edit operations. The first proposal is the edit invariant neural networks, based on differentiable Needleman-Wunsch algorithms. The second is the use of deep CNNs with concatenations. Our analysis shows that CNNs can recognize star-free regular expressions, and that deeper CNNs can recognize more complex regular expressions including the insertion/deletion of characters. The experimental results for the protein secondary structure prediction task suggest the importance of insertion/deletion. The test accuracy on the widely-used CB513 dataset is 71.5%, which is 1.2-points better than the current best result on non-ensemble models.

The evolution of biological sequences, such as proteins or DNAs, is driven by the three basic edit operations: substitution, insertion, and deletion. Motivated by the recent progress of neural network models for biological tasks, we implement two neural network architectures that can treat such edit operations. The first proposal is the edit invariant neural networks, based on differentiable Needleman-Wunsch algorithms. The second is the use of deep CNNs with concatenations. Our analysis shows that CNNs can recognize star-free regular expressions, and that deeper CNNs can recognize more complex regular expressions including the insertion/deletion of characters. The experimental results for the protein secondary structure prediction task suggest the importance of insertion/deletion. The test accuracy on the widely-used CB513 dataset is 71.5%, which is 1.2-points better than the current best result on non-ensemble models.