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DeepGI: Explainable Deep Learning for Gastrointestinal Image Classification

Houmaidi, Walid, Hadadi, Mohamed, Sabiri, Youssef, Chtouki, Yousra

arXiv.org Artificial Intelligence

This paper presents a comprehensive comparative model analysis on a novel gastrointestinal medical imaging dataset, comprised of 4,000 endoscopic images spanning four critical disease classes: Diverticulosis, Neoplasm, Peritonitis, and Ureters. Leveraging state-of-the-art deep learning techniques, the study confronts common endoscopic challenges such as variable lighting, fluctuating camera angles, and frequent imaging artifacts. The best performing models, VGG16 and MobileNetV2, each achieved a test accuracy of 96.5%, while Xception reached 94.24%, establishing robust benchmarks and baselines for automated disease classification. In addition to strong classification performance, the approach includes explainable AI via Grad-CAM visualization, enabling identification of image regions most influential to model predictions and enhancing clinical interpretability. Experimental results demonstrate the potential for robust, accurate, and interpretable medical image analysis even in complex real-world conditions. This work contributes original benchmarks, comparative insights, and visual explanations, advancing the landscape of gastrointestinal computer-aided diagnosis and underscoring the importance of diverse, clinically relevant datasets and model explainability in medical AI research.


Exploring Complexity Changes in Diseased ECG Signals for Enhanced Classification

Quintero, Camilo Quiceno, George, Sandip Varkey

arXiv.org Artificial Intelligence

The complex dynamics of the heart are reflected in its electrical activity, captured through electrocardiograms (ECGs). In this study we use nonlinear time series analysis to understand how ECG complexity varies with cardiac pathology. Using the large PTB-XL dataset, we extracted nonlinear measures from lead II ECGs, and cross-channel metrics (leads II, V2, A VL) using Spearman correlations and mutual information. Significant differences between diseased and healthy individuals were found in almost all measures between healthy and diseased classes, and between 5 diagnostic superclasses (p < .001). Moreover, incorporating these complexity quantifiers into machine learning models substantially improved classification accuracy measured using area under the ROC curve (AUC) from 0.86 (baseline) to 0.87 (nonlinear measures) and 0.90 (including cross-time series metrics).


Ontology-Based Concept Distillation for Radiology Report Retrieval and Labeling

Nützel, Felix, Dombrowski, Mischa, Kainz, Bernhard

arXiv.org Artificial Intelligence

Retrieval-augmented learning based on radiology reports has emerged as a promising direction to improve performance on long-tail medical imaging tasks, such as rare disease detection in chest X-rays. Most existing methods rely on comparing high-dimensional text embeddings from models like CLIP or CXR-BERT, which are often difficult to interpret, computationally expensive, and not well-aligned with the structured nature of medical knowledge. We propose a novel, ontology-driven alternative for comparing radiology report texts based on clinically grounded concepts from the Unified Medical Language System (UMLS). Our method extracts standardised medical entities from free-text reports using an enhanced pipeline built on RadGraph-XL and SapBERT. These entities are linked to UMLS concepts (CUIs), enabling a transparent, interpretable set-based representation of each report. We then define a task-adaptive similarity measure based on a modified and weighted version of the Tversky Index that accounts for synonymy, negation, and hierarchical relationships between medical entities. This allows efficient and semantically meaningful similarity comparisons between reports. We demonstrate that our approach outperforms state-of-the-art embedding-based retrieval methods in a radiograph classification task on MIMIC-CXR, particularly in long-tail settings. Additionally, we use our pipeline to generate ontology-backed disease labels for MIMIC-CXR, offering a valuable new resource for downstream learning tasks. Our work provides more explainable, reliable, and task-specific retrieval strategies in clinical AI systems, especially when interpretability and domain knowledge integration are essential. Our code is available at https://github.com/Felix-012/ontology-concept-distillation



Mobile-Friendly Deep Learning for Plant Disease Detection: A Lightweight CNN Benchmark Across 101 Classes of 33 Crops

Kumar, Anand, Monga, Harminder Pal, Brahma, Tapasi, Kalra, Satyam, Sherif, Navas

arXiv.org Artificial Intelligence

It is important to develop early detection systems which can accurately detect. The advancement in computer vision techniques has the potential to solve this challenge. We have developed a mobile-friendly solution which can accurately classify 101 plant diseases across 33 crops. We built a comprehensive dataset by combining different datasets, Plant Doc, PlantVillage, and PlantWild, all of which are for the same purpose. We evaluated performance across several lightweight architectures - MobileNetV2, MobileNetV3, MobileNetV3-Large, and EfficientNet-B0, B1 - specifically chosen for their efficiency on resource-constrained devices. The results were promising, with EfficientNet-B1 delivering our best performance at 94.7% classification accuracy. This architecture struck an optimal balance between accuracy and computational efficiency, making it well-suited for real-world deployment on mobile devices.


Meta-Entity Driven Triplet Mining for Aligning Medical Vision-Language Models

Ozturk, Saban, Yilmaz, Melih B., Kara, Muti, Yavuz, M. Talat, Koç, Aykut, Çukur, Tolga

arXiv.org Artificial Intelligence

Diagnostic imaging relies on interpreting both images and radiology reports, but the growing data volumes place significant pressure on medical experts, yielding increased errors and workflow backlogs. Medical vision-language models (med-VLMs) have emerged as a powerful framework to efficiently process multimodal imaging data, particularly in chest X-ray (CXR) evaluations, albeit their performance hinges on how well image and text representations are aligned. Existing alignment methods, predominantly based on contrastive learning, prioritize separation between disease classes over segregation of fine-grained pathology attributes like location, size or severity, leading to suboptimal representations. Here, we propose MedTrim (Meta-entity-driven Triplet mining), a novel method that enhances image-text alignment through multimodal triplet learning synergistically guided by disease class as well as adjectival and directional pathology descriptors. Unlike common alignment methods that separate broad disease classes, MedTrim leverages structured meta-entity information to preserve subtle but clinically significant intra-class variations. For this purpose, we first introduce an ontology-based entity recognition module that extracts pathology-specific meta-entities from CXR reports, as annotations on pathology attributes are rare in public datasets. For refined sample selection in triplet mining, we then introduce a novel score function that captures an aggregate measure of inter-sample similarity based on disease classes and adjectival/directional descriptors. Lastly, we introduce a multimodal triplet alignment objective for explicit within- and cross-modal alignment between samples sharing detailed pathology characteristics. Our demonstrations indicate that MedTrim improves performance in downstream retrieval and classification tasks compared to state-of-the-art alignment methods.


How Does Diverse Interpretability of Textual Prompts Impact Medical Vision-Language Zero-Shot Tasks?

Wang, Sicheng, Liu, Che, Arcucci, Rossella

arXiv.org Artificial Intelligence

Recent advancements in medical vision-language pre-training (MedVLP) have significantly enhanced zero-shot medical vision tasks such as image classification by leveraging large-scale medical image-text pair pre-training. However, the performance of these tasks can be heavily influenced by the variability in textual prompts describing the categories, necessitating robustness in MedVLP models to diverse prompt styles. Yet, this sensitivity remains underexplored. In this work, we are the first to systematically assess the sensitivity of three widely-used MedVLP methods to a variety of prompts across 15 different diseases. To achieve this, we designed six unique prompt styles to mirror real clinical scenarios, which were subsequently ranked by interpretability. Our findings indicate that all MedVLP models evaluated show unstable performance across different prompt styles, suggesting a lack of robustness. Additionally, the models' performance varied with increasing prompt interpretability, revealing difficulties in comprehending complex medical concepts. This study underscores the need for further development in MedVLP methodologies to enhance their robustness to diverse zero-shot prompts.


What limits performance of weakly supervised deep learning for chest CT classification?

Tushar, Fakrul Islam, D'Anniballe, Vincent M., Rubin, Geoffrey D., Lo, Joseph Y.

arXiv.org Artificial Intelligence

Weakly supervised learning with noisy data has drawn attention in the medical imaging community due to the sparsity of high-quality disease labels. However, little is known about the limitations of such weakly supervised learning and the effect of these constraints on disease classification performance. In this paper, we test the effects of such weak supervision by examining model tolerance for three conditions. First, we examined model tolerance for noisy data by incrementally increasing error in the labels within the training data. Second, we assessed the impact of dataset size by varying the amount of training data. Third, we compared performance differences between binary and multi-label classification. Results demonstrated that the model could endure up to 10% added label error before experiencing a decline in disease classification performance. Disease classification performance steadily rose as the amount of training data was increased for all disease classes, before experiencing a plateau in performance at 75% of training data. Last, the binary model outperformed the multilabel model in every disease category. However, such interpretations may be misleading, as the binary model was heavily influenced by co-occurring diseases and may not have learned the specific features of the disease in the image. In conclusion, this study may help the medical imaging community understand the benefits and risks of weak supervision with noisy labels. Such studies demonstrate the need to build diverse, large-scale datasets and to develop explainable and responsible AI.


Towards objective and systematic evaluation of bias in medical imaging AI

Stanley, Emma A. M., Souza, Raissa, Winder, Anthony, Gulve, Vedant, Amador, Kimberly, Wilms, Matthias, Forkert, Nils D.

arXiv.org Artificial Intelligence

Artificial intelligence (AI) models trained using medical images for clinical tasks often exhibit bias in the form of disparities in performance between subgroups. Since not all sources of biases in real-world medical imaging data are easily identifiable, it is challenging to comprehensively assess how those biases are encoded in models, and how capable bias mitigation methods are at ameliorating performance disparities. In this article, we introduce a novel analysis framework for systematically and objectively investigating the impact of biases in medical images on AI models. We developed and tested this framework for conducting controlled in silico trials to assess bias in medical imaging AI using a tool for generating synthetic magnetic resonance images with known disease effects and sources of bias. The feasibility is showcased by using three counterfactual bias scenarios to measure the impact of simulated bias effects on a convolutional neural network (CNN) classifier and the efficacy of three bias mitigation strategies. The analysis revealed that the simulated biases resulted in expected subgroup performance disparities when the CNN was trained on the synthetic datasets. Moreover, reweighing was identified as the most successful bias mitigation strategy for this setup, and we demonstrated how explainable AI methods can aid in investigating the manifestation of bias in the model using this framework. Developing fair AI models is a considerable challenge given that many and often unknown sources of biases can be present in medical imaging datasets. In this work, we present a novel methodology to objectively study the impact of biases and mitigation strategies on deep learning pipelines, which can support the development of clinical AI that is robust and responsible.


Higher order organizational features can distinguish protein interaction networks of disease classes: a case study of neoplasms and neurological diseases

Singh, Vikram, Singh, Vikram

arXiv.org Artificial Intelligence

Neoplasms (NPs) and neurological diseases and disorders (NDDs) are amongst the major classes of diseases underlying deaths of a disproportionate number of people worldwide. To determine if there exist some distinctive features in the local wiring patterns of protein interactions emerging at the onset of a disease belonging to either of these two classes, we examined 112 and 175 protein interaction networks belonging to NPs and NDDs, respectively. Orbit usage profiles (OUPs) for each of these networks were enumerated by investigating the networks' local topology. 56 non-redundant OUPs (nrOUPs) were derived and used as network features for classification between these two disease classes. Four machine learning classifiers, namely, k-nearest neighbour (KNN), support vector machine (SVM), deep neural network (DNN), random forest (RF) were trained on these data. DNN obtained the greatest average AUPRC (0.988) among these classifiers. DNNs developed on node2vec and the proposed nrOUPs embeddings were compared using 5-fold cross validation on the basis of average values of the six of performance measures, viz., AUPRC, Accuracy, Sensitivity, Specificity, Precision and MCC. It was found that nrOUPs based classifier performed better in all of these six performance measures.