Variant and gene interpretation are fundamental to personalized medicine and translational biomedicine. However, traditional approaches are manual and labor-intensive. Generative language models (LMs) can facilitate this process, accelerating the translation of fundamental research into clinically-actionable insights. While existing benchmarks have attempted to quantify the capabilities of LMs for interpreting scientific data, these studies focus on narrow tasks that do not translate to real-world research. To meet these challenges, we introduce CGBENCH, a robust benchmark that tests reasoning capabilities of LMs on scientific publications.

Careful curation of data sources can significantly improve the performance of LLM pre-training, but predominant approaches rely heavily on intuition or costly trial-and-error, making them difficult to generalize across different data domains and downstream tasks. Although scaling laws can provide a principled and general approach for data curation, standard deterministic extrapolation from small-scale experiments to larger scales requires strong assumptions on the reliability of such extrapolation, whose brittleness has been highlighted in prior works. In this paper, we introduce a probabilistic extrapolation framework for data mixture optimization that avoids rigid assumptions and explicitly models the uncertainty in performance across decision variables. We formulate data curation as a sequential decision-making problem-multi-fidelity, multi-scale Bayesian optimization-where {data mixtures, model scale, training steps} are adaptively selected to balance training cost and potential information gain. Our framework naturally gives rise to algorithm prototypes that leverage noisy information from inexpensive experiments to systematically inform costly training decisions. To accelerate methodological progress, we build a simulator based on 472 language model pre-training runs with varying data compositions from the SlimPajama dataset. We observe that even simple kernels and acquisition functions can enable principled decisions across training models from 20M to 1B parameters and achieve 2.6x and 3.3x speedups compared to multi-fidelity BO and random search baselines. Taken together, our framework underscores potential efficiency gains achievable by developing principled and transferable data mixture optimization methods.

Improving Large Language Model (LLM) agents for sequential decision-making tasks typically requires extensive task-specific knowledge engineering--custom prompts, curated examples, and specialized observation/action spaces. We investigate a different approach where agents automatically improve by learning from their own successful experiences without human intervention. Our method constructs and refines a database of self-generated trajectories that serve as in-context examples for future tasks.

Despite their consistent performance improvements, cross-modal retrieval models (e.g., CLIP) show degraded performances with retrieving keys composed of fused image-text modality (e.g., Wikipedia pages with both images and text). To address this critical challenge, multimodal retrieval has been recently explored to develop a unified single retrieval model capable of retrieving keys across diverse modality combinations. A common approach involves constructing new composed sets of image-text triplets (e.g., retrieving a pair of image and text given a query image). However, such an approach requires careful curation to ensure the dataset quality and fails to generalize to unseen modality combinations. To overcome these limitations, this paper proposes Generalized Contrastive Learning (GCL), a novel loss formulation that improves multimodal retrieval performance without the burdensome need for new dataset curation. Specifically, GCL operates by enforcing contrastive learning across all modalities within a mini-batch, utilizing existing image-caption paired datasets to learn a unified representation space. We demonstrate the effectiveness of GCL by showing consistent performance improvements on off-the-shelf multimodal retrieval models (e.g., VISTA, CLIP, and TinyCLIP) using the M-BEIR, MMEB, and CoVR benchmarks.

Synthetically-generated data plays an increasingly larger role in training large language models. However, while synthetic data has been found to be useful, studies have also shown that without proper curation it can cause LLM performance to plateau, or even collapse, after many training iterations. In this paper, we formalize this question and develop a theoretical framework to investigate how much curation is needed in order to ensure that LLM performance continually improves. Our analysis is inspired by boosting, a classic machine learning technique that leverages a very weak learning algorithm to produce an arbitrarily good classifier. The approach we analyze subsumes many recently proposed methods for training LLMs on synthetic data, and thus our analysis sheds light on why they are successful, and also suggests opportunities for future improvement. We present experiments that validate our theory, and show that dynamically focusing labeling resources on the most challenging examples --- in much the same way that boosting focuses the efforts of the weak learner --- leads to improved performance.

Despite extensive efforts to create fairer machine learning (ML) datasets, there remains a limited understanding of the practical aspects of dataset curation. Drawing from interviews with 30 ML dataset curators, we present a comprehensive taxonomy of the challenges and trade-offs encountered throughout the dataset curation lifecycle. Our findings underscore overarching issues within the broader fairness landscape that impact data curation. We conclude with recommendations aimed at fostering systemic changes to better facilitate fair dataset curation practices.

Our findings show interesting trends, particularly pertaining to recent methods for data curation such as synthetic data generation and lookup based on CLIP embeddings. We show that although these strategies are highly competitive for certain tasks, the curation strategy used to assemble the original ImageNet-1K dataset remains the gold standard. We anticipate that our benchmark can illuminate the path for new methods to further reduce the gap.

The rapid progress in generative models has resulted in impressive leaps in generation quality, blurring the lines between synthetic and real data. Web-scale datasets are now prone to the inevitable contamination by synthetic data, directly impacting the training of future generated models. Already, some theoretical results on self-consuming generative models (a.k.a., iterative retraining) have emerged in the literature, showcasing that either model collapse or stability could be possible depending on the fraction of generated data used at each retraining step. However, in practice, synthetic data is often subject to human feedback and curated by users before being used and uploaded online. For instance, many interfaces of popular text-to-image generative models, such as Stable Diffusion or Midjourney, produce several variations of an image for a given query which can eventually be curated by the users. In this paper, we theoretically study the impact of data curation on iterated retraining of generative models and show that it can be seen as an implicit preference optimization mechanism .