A plant's phenome is defined by its physical and biochemical characteristics, and is the result of the interaction of its genome and its environment.

Multi-class wine classification presents fundamental trade-offs between model accuracy, feature dimensionality, and interpretability - critical factors for production deployment in analytical chemistry. This paper presents a comprehensive empirical study of One-vs-Rest logistic regression on the UCI Wine dataset (178 samples, 3 cultivars, 13 chemical features), comparing from-scratch gradient descent implementation against scikit-learn's optimized solvers and quantifying L1 regularization effects on feature sparsity. Manual gradient descent achieves 92.59 percent mean test accuracy with smooth convergence, validating theoretical foundations, though scikit-learn provides 24x training speedup and 98.15 percent accuracy. Class-specific analysis reveals distinct chemical signatures with heterogeneous patterns where color intensity varies dramatically (0.31 to 16.50) across cultivars. L1 regularization produces 54-69 percent feature reduction with only 4.63 percent accuracy decrease, demonstrating favorable interpretability-performance trade-offs. We propose an optimal 5-feature subset achieving 62 percent complexity reduction with estimated 92-94 percent accuracy, enabling cost-effective deployment with 80 dollars savings per sample and 56 percent time reduction. Statistical validation confirms robust generalization with sub-2ms prediction latency suitable for real-time quality control. Our findings provide actionable guidelines for practitioners balancing comprehensive chemical analysis against targeted feature measurement in resource-constrained environments.

Accurate prediction of grape phenology is essential for timely vineyard management decisions, such as scheduling irrigation and fertilization, to maximize crop yield and quality. While traditional biophysical models calibrated on historical field data can be used for season-long predictions, they lack the precision required for fine-grained vineyard management. Deep learning methods are a compelling alternative but their performance is hindered by sparse phenology datasets, particularly at the cultivar level. We propose a hybrid modeling approach that combines multi-task learning with a recurrent neural network to parameterize a differentiable biophysical model. By using multi-task learning to predict the parameters of the biophysical model, our approach enables shared learning across cultivars while preserving biological structure, thereby improving the robustness and accuracy of predictions. Empirical evaluation using real-world and synthetic datasets demonstrates that our method significantly outperforms both conventional biophysical models and baseline deep learning approaches in predicting phenologi-cal stages, as well as other crop state variables such as cold-hardiness and wheat yield.

This paper introduces a novel approach to budgeted online active learning from finite-horizon data streams with extremely limited labeling budgets. In agricultural applications, such streams might include daily weather data over a growing season, and labels require costly measurements of weather-dependent plant characteristics. Our method integrates two key sources of prior information: a collection of preexisting expert predictors and episodic behavioral knowledge of the experts based on unlabeled data streams. Unlike previous research on online active learning with experts, our work simultaneously considers query budgets, finite horizons, and episodic knowledge, enabling effective learning in applications with severely limited labeling capacity. We demonstrate the utility of our approach through experiments on various prediction problems derived from both a realistic agricultural crop simulator and real-world data from multiple grape cultivars. The results show that our method significantly outperforms baseline expert predictions, uniform query selection, and existing approaches that consider budgets and limited horizons but neglect episodic knowledge, even under highly constrained labeling budgets.

Cold temperatures can cause significant frost damage to fruit crops depending on their resilience, or cold hardiness, which changes throughout the dormancy season. This has led to the development of predictive cold-hardiness models, which help farmers decide when to deploy expensive frost-mitigation measures. Unfortunately, cold-hardiness data for model training is only available for some fruit cultivars due to the need for specialized equipment and expertise. Rather, farmers often do have years of phenological data (e.g. date of budbreak) that they regularly collect for their crops. In this work, we introduce a new transfer-learning framework, Transfer via Auxiliary Labels (TAL), that allows farmers to leverage the phenological data to produce more accurate cold-hardiness predictions, even when no cold-hardiness data is available for their specific crop. The framework assumes a set of source tasks (cultivars) where each has associated primary labels (cold hardiness) and auxiliary labels (phenology). However, the target task (new cultivar) is assumed to only have the auxiliary labels. The goal of TAL is to predict primary labels for the target task via transfer from the source tasks. Surprisingly, despite the vast literature on transfer learning, to our knowledge, the TAL formulation has not been previously addressed. Thus, we propose several new TAL approaches based on model selection and averaging that can leverage recent deep multi-task models for cold-hardiness prediction. Our results on real-world cold-hardiness and phenological data for multiple grape cultivars demonstrate that TAL can leverage the phenological data to improve cold-hardiness predictions in the absence of cold-hardiness data.

Dormant pruning, or the removal of unproductive portions of a tree while a tree is not actively growing, is an important orchard task to help maintain yield, requiring years to build expertise. Because of long training periods and an increasing labor shortage in agricultural jobs, pruning could benefit from robotic automation. However, to program robots to prune branches, we first need to understand how pruning decisions are made, and what variables in the environment (e.g., branch size and thickness) we need to capture. Working directly with three pruning stakeholders -- horticulturists, growers, and pruners -- we find that each group of human experts approaches pruning decision-making differently. To capture this knowledge, we present three studies and two extracted pruning protocols from field work conducted in Prosser, Washington in January 2022 and 2023. We interviewed six stakeholders (two in each group) and observed pruning across three cultivars -- Bing Cherries, Envy Apples, and Jazz Apples -- and two tree architectures -- Upright Fruiting Offshoot and V-Trellis. Leveraging participant interviews and video data, this analysis uses grounded coding to extract pruning terminology, discover horticultural contexts that influence pruning decisions, and find implementable pruning heuristics for autonomous systems. The results include a validated terminology set, which we offer for use by both pruning stakeholders and roboticists, to communicate general pruning concepts and heuristics. The results also highlight seven pruning heuristics utilizing this terminology set that would be relevant for use by future autonomous robot pruning systems, and characterize three discovered horticultural contexts (i.e., environmental management, crop-load management, and replacement wood) across all three cultivars.

The cotton industry in the United States is committed to sustainable production practices that minimize water, land, and energy use while improving soil health and cotton output. Climate-smart agricultural technologies are being developed to boost yields while decreasing operating expenses. Crop yield prediction, on the other hand, is difficult because of the complex and nonlinear impacts of cultivar, soil type, management, pest and disease, climate, and weather patterns on crops. To solve this issue, we employ machine learning (ML) to forecast production while considering climate change, soil diversity, cultivar, and inorganic nitrogen levels. From the 1980s to the 1990s, field data were gathered across the southern cotton belt of the United States. To capture the most current effects of climate change over the previous six years, a second data source was produced using the process-based crop model, GOSSYM. We concentrated our efforts on three distinct areas inside each of the three southern states: Texas, Mississippi, and Georgia. To simplify the amount of computations, accumulated heat units (AHU) for each set of experimental data were employed as an analogy to use time-series weather data. The Random Forest Regressor yielded a 97.75% accuracy rate, with a root mean square error of 55.05 kg/ha and an R2 of around 0.98. These findings demonstrate how an ML technique may be developed and applied as a reliable and easy-to-use model to support the cotton climate-smart initiative.