cortex
STSBENCH: ALarge-Scale Dataset for Modeling Neuronal Activity in the Dorsal Stream of Primate Visual Cortex
The primate visual system is typically divided into two streams -- the ventral stream, responsible for object recognition, and the dorsal stream, responsible for encoding spatial relations and motion. Recent studies have shown that convolutional neural networks (CNNs) pretrained on object recognition tasks are remarkably effective at predicting neuronal responses in the ventral stream, shedding light on the neural mechanisms underlying object recognition. However, similar models of the dorsal stream remain underdeveloped due to the lack of large scale datasets encompassing dorsal stream areas. To address this gap, we present STSBENCH, a dataset of large-scale, single neuron recordings from over 2,000 neurons in the superior temporal sulcus (STS), a nearly 50-fold increase over existing dorsal stream datasets, collected while Rhesus macaques viewed thousands of unique, natural videos. We show that our dataset can be used for benchmarking encoding models of dorsal stream neuronal responses and reconstructing visual input from neural activity.
Task-Optimized Convolutional Recurrent Networks Align with Tactile Processing in the Rodent Brain
Tactile sensing remains far less understood in neuroscience and less effective in artificial systems compared to more mature modalities such as vision and language. We bridge these gaps by introducing an Encoder-Attender-Decoder (EAD) framework to systematically explore the space of task-optimized temporal neural networks trained on realistic tactile input sequences from a customized rodent whisker-array simulator. We identify convolutional recurrent neural networks (ConvRNNs) as superior encoders to purely feedforward and state-space architectures for tactile categorization. Crucially, these ConvRNN-encoder-based EAD models achieve neural representations closely matching rodent somatosensory cortex, saturating the explainable neural variability and revealing a clear linear relationship between supervised categorization performance and neural alignment. Furthermore, contrastive self-supervised ConvRNN-encoder-based EADs, trained with tactile-specific augmentations, match supervised neural fits, serving as an ethologically-relevant, label-free proxy. For neuroscience, our findings highlight nonlinear recurrent processing as important for general-purpose tactile representations in somatosensory cortex, providing the first quantitative characterization of the underlying inductive biases in this system. For embodied AI, our results emphasize the importance of recurrent EAD architectures to handle realistic tactile inputs, along with tailored self-supervised learning methods for achieving robust tactile perception with the same type of sensors animals use to sense in unstructured environments.
Dimensionality Mismatch Between Brains and Artificial Neural Networks
Biological and artificial vision systems both rely on hierarchical architectures, yet it remains unclear how their representational geometry evolves across processing stages, and what functional consequences may arise from potential differences. In this work, we systematically quantify and compare the linear and nonlinear dimensionality of human brain activity (fMRI) and artificial neural networks (ANNs) during natural image viewing. In the human ventral visual stream, both dimensionality measures increase along the visual hierarchy, supporting the emergence of semantic and abstract representations. For linear dimensionality, most ANNs show a similar increase, but only for pooled features, emphasizing the importance of appropriate feature readouts in brain-model comparisons. In contrast, nonlinear dimensionality shows a collapse in the later layers of ANNs, pointing at a mismatch in representational geometry between the human and artificial visual systems. This mismatch may have functional consequences: while high-dimensional brain representations support flexible generalization to abstract features, ANNs appear to lose this capacity in later layers, where their representations become overly compressed. Overall, our findings propose dimensionality alignment as a benchmark for building more flexible and biologically grounded vision models.
Shaping Sequence Attractor Schema in Recurrent Neural Networks
Sequence schemas are abstract, reusable knowledge structures that facilitate rapid adaptation and generalization in novel sequential tasks. In both animals and humans, shaping is an efficient way to acquire such schemas, particularly in complex sequential tasks. As a form of curriculum learning, shaping works by progressively advancing from simple subtasks to integrated full sequences, and ultimately enabling generalization across different task variations. Despite the importance of schemas in cognition and shaping in schema acquisition, the underlying neural dynamics at play remain poorly understood. To explore this, we train recurrent neural networks on an odor-sequence task using a shaping protocol inspired by well-established paradigms in experimental neuroscience. Our model provides the first systematic reproduction of key features of schema learning observed in the orbitofrontal cortex, including rapid adaptation to novel tasks, structured neural representation geometry, and progressive dimensionality compression during learning. Crucially, analysis of the trained RNN reveals that the learned schema is implemented through sequence attractors. These attractor dynamics emerge gradually through the shaping process: starting with isolated discrete attractors in simple tasks, evolving into linked sequences, and eventually abstracting into generalizable attractors that capture shared task structure. Moreover, applying our method to a keyword spotting task shows that shaping facilitates the rapid development of sequence attractor schemas, leading to enhanced learning efficiency.
He Couldn't Land a Job Interview. Was AI to Blame?
Armed with some Python and a white-hot sense of injustice, one medical student spent six months trying to figure out whether an algorithm trashed his job application. It was mid-October, peak leaf-peeping season in Hanover, New Hampshire, and Chad Markey was on a rare break between clinical rotations during his last year of medical school. He should have been inhaling Green Mountain air and gossiping with his Dartmouth classmates about life after graduation. In a few months, they'd all be going their separate ways to start residency training at hospitals around the country. Instead, Markey was alone in his apartment, deep down a rabbit hole, preparing to go to war. He'd wake each morning, eat breakfast, open his laptop at the kitchen table or settle into the tan armchair with the good back support, and start coding . Some days, he wouldn't notice the sun had gone down until one of his roommates came home and asked why the lights weren't on. For days, Markey had been scrolling through a Discord group about medical residency, a font of crowdsourced knowledge where students report back to their peers on every stage of the application and selection process. He'd watched as other students, lots of them, posted about the interview invitations they'd received.
Brain encoding models based on multimodal transformers can transfer across language and vision
Encoding models have been used to assess how the human brain represents concepts in language and vision. While language and vision rely on similar concept representations, current encoding models are typically trained and tested on brain responses to each modality in isolation. Recent advances in multimodal pretraining have produced transformers that can extract aligned representations of concepts in language and vision. In this work, we used representations from multimodal transformers to train encoding models that can transfer across fMRI responses to stories and movies. We found that encoding models trained on brain responses to one modality can successfully predict brain responses to the other modality, particularly in cortical regions that represent conceptual meaning. Further analysis of these encoding models revealed shared semantic dimensions that underlie concept representations in language and vision. Comparing encoding models trained using representations from multimodal and unimodal transformers, we found that multimodal transformers learn more aligned representations of concepts in language and vision. Our results demonstrate how multimodal transformers can provide insights into the brain's capacity for multimodal processing.
A mechanistic multi-area recurrent network model of decision-making
Recurrent neural networks (RNNs) trained on neuroscience-based tasks have been widely used as models for cortical areas performing analogous tasks. However, very few tasks involve a single cortical area, and instead require the coordination of multiple brain areas. Despite the importance of multi-area computation, there is a limited understanding of the principles underlying such computation. We propose to use multi-area RNNs with neuroscience-inspired architecture constraints to derive key features of multi-area computation. In particular, we show that incorporating multiple areas and Dale's Law is critical for biasing the networks to learn biologically plausible solutions. Additionally, we leverage the full observability of the RNNs to show that output-relevant information is preferentially propagated between areas. These results suggest that cortex uses modular computation to generate minimal sufficient representations of task information. More broadly, our results suggest that constrained multi-area RNNs can produce experimentally testable hypotheses for computations that occur within and across multiple brain areas, enabling new insights into distributed computation in neural systems.
Descriptions
GloVE [25] is a 300-dimensional word embedding space. It is an dimensionality-representation representation of word-word co-occurrence statistics. BERT-E [10] is a 3072-dimensional contextualized word embedding space extracted from BERT. We used the Flair NLP [1] implementation of BERT embeddings. FLAIR [1] is a 4096-dimensional contextualized character level word embedding space.
Emergence of Hierarchical Layers in a Single Sheet of Self-Organizing Spiking Neurons
Traditionally convolutional neural network architectures have been designed by stacking layers on top of each other to form deeper hierarchical networks. The cortex in the brain however does not just stack layers as done in standard convolution neural networks, instead different regions are organized next to each other in a large single sheet of neurons. Biological neurons self organize to form topographic maps, where neurons encoding similar stimuli group together to form logical clusters. Here we propose new self-organization principles that allow for the formation of hierarchical cortical regions (i.e.