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Contraction and Hourglass Persistence for Learning on Graphs, Simplices, and Cells

Ji, Mattie, Roy, Indradyumna, Garg, Vikas

arXiv.org Machine Learning

Persistent homology (PH) encodes global information, such as cycles, and is thus increasingly integrated into graph neural networks (GNNs). PH methods in GNNs typically traverse an increasing sequence of subgraphs. In this work, we first expose limitations of this inclusion procedure. To remedy these shortcomings, we analyze contractions as a principled topological operation, in particular, for graph representation learning. We study the persistence of contraction sequences, which we call Contraction Homology (CH). We establish that forward PH and CH differ in expressivity. We then introduce Hourglass Persistence, a class of topological descriptors that interleave a sequence of inclusions and contractions to boost expressivity, learnability, and stability. We also study related families parametrized by two paradigms. We also discuss how our framework extends to simplicial and cellular networks. We further design efficient algorithms that are pluggable into end-to-end differentiable GNN pipelines, enabling consistent empirical improvements over many PH methods across standard real-world graph datasets. Code is available at \href{https://github.com/Aalto-QuML/Hourglass}{this https URL}.








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Neural Information Processing Systems

We then provide an algorithm to efficiently sketch input data using such embeddings. The sketch size of the embedding used in the algorithm has a linear dependence on the number of sketching dimensions of the input.


A Non-asymptotic Analysis for Learning and Applying a Preconditioner in MCMC

Hird, Max, Maire, Florian, Negrea, Jeffrey

arXiv.org Machine Learning

Preconditioning is a common method applied to modify Markov chain Monte Carlo algorithms with the goal of making them more efficient. In practice it is often extremely effective, even when the preconditioner is learned from the chain. We analyse and compare the finite-time computational costs of schemes which learn a preconditioner based on the target covariance or the expected Hessian of the target potential with that of a corresponding scheme that does not use preconditioning. We apply our results to the Unadjusted Langevin Algorithm (ULA) for an appropriately regular target, establishing non-asymptotic guarantees for preconditioned ULA which learns its preconditioner. Our results are also applied to the unadjusted underdamped Langevin algorithm in the supplementary material. To do so, we establish non-asymptotic guarantees on the time taken to collect $N$ approximately independent samples from the target for schemes that learn their preconditioners under the assumption that the underlying Markov chain satisfies a contraction condition in the Wasserstein-2 distance. This approximate independence condition, that we formalize, allows us to bridge the non-asymptotic bounds of modern MCMC theory and classical heuristics of effective sample size and mixing time, and is needed to amortise the costs of learning a preconditioner across the many samples it will be used to produce.