Decoding visual signals holds an appealing potential to unravel the complexities of cognition and perception. While recent reconstruction tasks leverage powerful generative models to produce high-fidelity images from neural recordings, they often pay limited attention to the underlying neural representations and rely heavily on pretrained priors. As a result, they provide little insight into how individual voxels encode and differentiate semantic content or how these representations vary across subjects. To mitigate this gap, we present an insightful Multi-subject Invariant Neural Decoding (iMIND) model, which employs a novel dual-decoding framework-both biometric and semantic decoding-to offer neural interpretability in a data-driven manner and deepen our understanding of brain-based visual functionalities. Our iMIND model operates through three core steps: establishing a shared neural representation space across subjects using a ViT-based masked autoencoder, disentangling neural features into complementary subject-specific and object-specific components, and performing dual decoding to support both biometric and semantic classification tasks. Experimental results demonstrate that iMIND achieves state-of-the-art decoding performance with minimal scalability limitations. Furthermore, iMIND empirically generates voxel-object activation fingerprints that reveal object-specific neural patterns and enable investigation of subject-specific variations in attention to identical stimuli. These findings provide a foundation for more interpretable and generalizable subject-invariant neural decoding, advancing our understanding of the voxel semantic selectivity as well as the neural vision processing dynamics.

However, deploying these models can be unreliable when significant distribution gaps exist between training and test data, while fine-tuning for diverse scenarios is often costly. This creates a need for methods that can efficiently adapt to new data at test time without expensive retraining. Cache-based test-time adapters serve this purpose by storing representative test samples to guide subsequent classifications. Yet, these methods typically employ naive cache management with limited capacity, leading to severe catastrophic forgetting when samples are inevitably dropped during updates. In this paper, we propose Dota(DistributiOnal Test-time Adaptation), a simple yet effective method addressing this limitation. Crucially, instead of merely memorizing individual test samples, Dotacontinuously estimates the underlying distribution of the test data stream. Test-time posterior probabilities are then computed using these dynamically estimated distributions via Bayes' theorem for adaptation. This distribution-centric approach enables the model to continually learn and adapt to the deployment environment. Extensive experiments validate that Dota significantly mitigates forgetting and achieves state-of-the-art performance compared to existing methods.

Graph Neural Networks (GNNs) have achieved strong performance across a range of graph representation learning tasks, yet their adversarial robustness in graph classification remains underexplored compared to node classification. While most existing defenses focus on the message-passing component, this work investigates the overlooked role of pooling operations in shaping robustness. We present a theoretical analysis of standard flat pooling methods (sum, average and max), deriving upper bounds on their adversarial risk and identifying their vulnerabilities under different attack scenarios and graph structures. Motivated by these insights, we propose Robust Singular Pooling (RS-Pool), a novel pooling strategy that leverages the dominant singular vector of the node embedding matrix to construct a robust graph-level representation. We theoretically investigate the robustness of RS-Pool and interpret the resulting bound leading to improved understanding of our proposed pooling operator. While our analysis centers on Graph Convolutional Networks (GCNs), RS-Pool is model-agnostic and can be implemented efficiently via power iteration. Empirical results on real-world benchmarks show that RS-Pool provides better robustness than the considered pooling methods when subject to state-of-the-art adversarial attacks while maintaining competitive clean accuracy. Our code is publicly available at: https://github.com/king/rs-pool.

Graph Transformers (GTs) have emerged as a powerful paradigm for graph representation learning due to their ability to model diverse node interactions. However, existing GTs often rely on intricate architectural designs tailored to specific interactions, limiting their flexibly. To address this, we propose a unified hierarchical mask framework that reveals an underlying equivalence between model architecture and attention mask construction. This framework enables a consistent modeling paradigm by capturing diverse interactions through carefully designed attention masks. Theoretical analysis under this framework demonstrates that the probability of correct classification positively correlates with the receptive field size and label consistency, leading to a fundamental design principle: An effective attention mask should ensure both a sufficiently large receptive field and a high level of label consistency.

Omit references to the index or number of the sub-images, such as (xx), left, right, etc.3. There might be a common prefix or suffix caption shared among all sub-images at the beginning, end, or within the caption. Please incorporate the prefix or suffix into each sub-image's caption. If one subcaption contains context for multiple other subcaptions, add that context to each of the relevant subcaptions.4. The final output should be in JSON format, with an outer field'subcaptions', with a value that is a list of'subfigure' and'subcaption' dictionaries.5. If a subfigure contains more nested figures, i.e. subfigure (A) contains references to (left) and (right), add a field called "location" that stores the "left" or "right".6. If there are no references to sub-images, give a single subcaption with label "A".User Prompt:You are a research paper processor which splits the captions of figures into sub-captions that correspond with subfigures.System Prompt:"(a) H&E image of a breast tumor tissue. Fluorescently labeled markers superimposed as green color on the H&E image, (b) \u03b2-catenin, (c) pan-keratin, and (d) smooth muscle \u03b1-actin, markers.":{"subcaptions":

Multi-modal models are data hungry. While datasets with natural images are abundant, medical image datasets can not afford the same luxury. To enable representation learning for medical images at scale, we turn to YouTube, a platform with a large reservoir of open-source medical pedagogical videos. We curate MedicalNarratives, a dataset 4.7M medical image-text pairs, with 1M samples containing dense annotations in the form of spatial traces (and bounding boxes), and 118K videos centered on the trace event (with aligned text), enabling spatiotemporal grounding beyond single frames. Similar to think-aloud studies where instructors speak while hovering their mouse cursor movements over relevant image regions, 1M images in MedicalNarratives contains localized mouse traces in image pixels, creating a spatial and temporal association between the text and pixels. To evaluate the utility of MedicalNarratives, we train GENMEDCLIP with a CLIP-like objective using our dataset spanning 12 medical domains. GENMEDCLIP outperforms previous state-of-the-art models on all 12 domains on a newly constructed medical imaging benchmark.

The interpretation of genomic sequences is crucial for understanding biological processes. To handle the growing volume of DNA sequence data, Genomic Foundation Models (GFMs) have been developed by adapting architectures and training paradigms from Large Language Models (LLMs). Despite their remarkable performance in DNA sequence classification tasks, there remains a lack of systematic understanding regarding the pre-training and task-adaptation processes of GFMs. Moreover, existing GFMs cannot achieve state-of-the-art performance on both short and long-context tasks and lack multimodal abilities. By revisiting pre-training architectures and post-training techniques, we propose OMNI-DNA, a family of models spanning 20M to 1.1B parameters that supports sequence understanding, long-context genomic reasoning, and natural-language annotation. Omni-DNA establishes new state-of-the-art results on 18 of 26 evaluations drawn from Nucleotide Transformer and Genomic Benchmarks. When jointly finetuning on biologically related tasks, Omni-DNA consistently outperforms existing models and demonstrates multi-tasking abilities. Furthermore, we introduce SEQPACK, an adaptive compression mechanism that enables efficient long-context modeling by summarizing historical tokens through position-aware learnable sampling. This allows transformer-based models to process ultra-long genomic sequences with minimal memory and computational overhead.

Graph Neural Networks operate through bottom-up message-passing, fundamentally differing from human visual perception, which intuitively captures global structures first. We investigate the underappreciated potential of vision models for graph understanding, finding they achieve performance comparable to GNNs on established benchmarks while exhibiting distinctly different learning patterns. These divergent behaviors, combined with limitations of existing benchmarks that conflate domain features with topological understanding, motivate our introduction of GraphAbstract. This benchmark evaluates models' ability to perceive global graph properties as humans do: recognizing organizational archetypes, detecting symmetry, sensing connectivity strength, and identifying critical elements. Our results reveal that vision models significantly outperform GNNs on tasks requiring holistic structural understanding and maintain generalizability across varying graph scales, while GNNs struggle with global pattern abstraction and degrade with increasing graph size. This work demonstrates that vision models possess remarkable yet underutilized capabilities for graph structural understanding, particularly for problems requiring global topological awareness and scale-invariant reasoning. These findings open new avenues to leverage this underappreciated potential for developing more effective graph foundation models for tasks dominated by holistic pattern recognition.

Although today's pretrained discriminative vision-language models (e.g., CLIP) have demonstrated strong perception abilities, such as zero-shot image classification, they also suffer from the bag-of-words problem and spurious bias. To mitigate these problems, some pioneering studies leverage powerful generative models (e.g., pretrained diffusion models) to realize generalizable image classification, dubbed Diffusion Classifier (DC). Specifically, by randomly sampling a Gaussian noise, DC utilizes the differences of denoising effects with different category conditions to classify categories. Unfortunately, an inherent and notorious weakness of existing DCs is noise instability: different random sampled noises lead to significant performance changes. To achieve stable classification performance, existing DCs always ensemble the results of hundreds of sampled noises, which significantly reduces the classification speed.

Network traffic classification is essential for network management and security. In recent years, deep learning (DL) algorithms have emerged as essential tools for classifying complex traffic. However, they rely heavily on high-quality labeled training data. In practice, traffic data is often noisy due to human error or inaccurate automated labeling, which could render classification unreliable and lead to severe consequences. Although some studies have alleviated the label noise issue in specific scenarios, they are difficult to generalize to general traffic classification tasks due to the inherent semantic complexity of traffic data.