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Large language models (LLMs) have grown in their usage to provide support for question answering across numerous disciplines. The models on their own have already shown promise for answering basic questions, however fail quickly where expert domain knowledge is required or the question is nuanced. Scientific research often involves searching for relevant literature, distilling pertinent information from that literature and analysing how the findings support or contradict one another. The information is often encapsulated in the full text body of research articles, rather than just in the abstracts. Statements within these articles frequently require the wider article context to be fully understood. We have built an LLM-based system that performs such search and distillation of information encapsulated in scientific literature, and we evaluate our keyword based search and information distillation system against a set of biology related questions from previously released literature benchmarks. We demonstrate sparse retrieval methods exhibit results close to state of the art without the need for dense retrieval, with its associated infrastructure and complexity overhead. We also show how to increase the coverage of relevant documents for literature review generation.

Okay, I know what you're probably thinking. We've been hearing about the use of tiny robots in medicine for years, maybe even decades. Where are my medical microbots already? They're coming, says Brad Nelson, who works in robotics at ETH Zürich. And they could be a game changer for a number of serious diseases.

Scientists have developed tiny robots using human cells that could one day patrol our bodies, searching for and healing diseased cells and tissue. So-called'anthrobots,' assembled from human cells can repair damage to brain cells in a dish, according to a study published Thursday in the journal Advanced Science. Scientists at Tufts University in Massachusetts developed the SIZE robots to heal diseases, but foresee the technology repairing cell and tissue damage from conditions such as Alzheimer's. These bots - whose name means'human robots' - were made from human airway cells. To build the anthrobots, scientists started with samples of the cells that line human lungs.

The new microbot inspired by starfish larva stirs up plastic beads. Among scientists, there is great interest in tiny machines that are set to revolutionise medicine. These microrobots, often only a fraction of the diameter of a hair, are made to swim through the body to deliver medication to specific areas and perform the smallest surgical procedures. The designs of these robots are often inspired by natural microorganisms such as bacteria or algae. Now, for the first time, a research group at ETH Zurich has developed a microrobot design inspired by starfish larva, which use ciliary bands on their surface to swim and feed.

Last year, scientists created the first living machines by joining cells from African clawed frogs with tiny robots. One of them used sculpted cardiac cells to propel themselves along, push payloads, and even work collectively within a swarm of other "Xenobots." And today, the same research team announced the creation of life forms capable of self-assembly into a body from a single cell, according to a new study published in the journal Science Robotics. The Xenobots can also move more quickly, navigate varying environments, and live longer than the first models -- all while working in groups and healing if and when they're damaged. Compared to the earlier model of Xenobots (or, number 1.0) -- where the millimeter-sized automatons were made in a "top-down" style via the manual placement of tissue, shaping frog skin surgically and including cardiac cells to create motion.

Physiological functions of the microtubule cytoskeleton are expected to be regulated by a variety of posttranslational tubulin modifications. For instance, tubulin glycylation is almost exclusively found in cilia and flagella, but its role in the function of these organelles remains unclear. Gadadhar et al. now demonstrate in mice that glycylation, although nonessential for the formation of cilia and flagella, coordinates the beat waveform of sperm flagella. This activity is a prerequisite for progressive sperm swimming and thus for male fertility. At the ultrastructural level, lack of glycylation perturbed the distribution of axonemal dynein conformations, which may explain the observed defects in flagellar beat. Science , this issue p. [eabd4914][1] ### INTRODUCTION Microtubules are key components of the eukaryotic cytoskeleton. Although they are involved in a wide variety of functions, microtubules are structurally highly similar across most cell types and organisms. It was suggested that a “tubulin code,” formed by combinations of tubulin posttranslational modifications, adapts individual microtubules to specific functions within living cells. However, clear-cut functional and mechanistic data verifying this concept are still scarce. Glycylation is among the least explored posttranslational modifications of tubulin and has, so far, exclusively been found on microtubules of cilia and flagella from a variety of species. Previous work has suggested that glycylation might be essential for cilia and flagella, but mechanistic insight remains lacking. ### RATIONALE Two enzymes from the tubulin-tyrosine ligase-like (TTLL) family, TTLL3 and TTLL8, are essential to initiate glycylation of tubulin in mammals. To entirely abolish glycylation at the organism level and to determine its physiological function, we generated a double-knockout mouse lacking both glycylating enzymes ( Ttll3−/−Ttll8−/− ). Inactivation of these two enzymes led to a lack of glycylation in all analyzed cilia and flagella. This allowed us to investigate the role of glycylation in the function of these organelles. ### RESULTS Despite the absence of glycylation in Ttll3−/−Ttll8−/− mice, no gross defects were observed at the organism and tissue levels. Motile ependymal cilia in brain ventricles as well as motile cilia in the respiratory tract were present and appeared normal. Sperm flagella were also assembled normally, and sperm were able to swim. However, in vitro fertility assays showed that male Ttll3−/−Ttll8−/− mice were subfertile. Computer-assisted sperm analyses revealed motility defects of Ttll3−/−Ttll8−/− sperm. Further analyses showed that lack of glycylation leads to perturbed flagellar beat patterns, causing Ttll3−/−Ttll8−/− sperm to swim predominantly along circular paths. This is highly unusual for mammalian sperm and interferes with their ability to reach the oocyte for fertilization. To determine the molecular mechanisms underlying this aberrant flagellar beat, we used cryo–electron tomography. The three-dimensional structure of the 96-nm repeat of the Ttll3−/−Ttll8−/− sperm axoneme showed no aberrations in its overall assembly. By contrast, the structure of both outer and inner dynein arms (ODAs and IDAs) was perturbed in Ttll3−/−Ttll8−/− flagella. Classification analysis showed that the incidence and distribution of pre-powerstroke and post-powerstroke conformations of ODAs and IDAs were altered in Ttll3−/−Ttll8−/− sperm. These ultrastructural findings indicate that glycylation is required to efficiently control the dynein powerstroke cycle, which is essential for the generation of a physiological flagellar beat. ### CONCLUSION Our work shows that tubulin glycylation regulates the beat of mammalian flagella by modulating axonemal dynein motor activity. Lack of glycylation leads to perturbed sperm motility and male subfertility in mice. Considering that human sperm are more susceptible than mouse sperm to deficiencies in sperm motility, our findings imply that a perturbation of tubulin glycylation could underlie some forms of male infertility in humans. ![Figure][2] Tubulin glycylation controls sperm motility. ( A ) Microtubules in sperm flagella are rich in tubulin posttranslational modifications. Mice deficient for the glycylating enzymes TTLL3 and TTLL8 lack glycylation. ( B ) Mammalian sperm swim in linear paths. In the absence of glycylation, abnormal, mostly circular swimming patterns are observed, which impede progressive swimming. ( C ) Absence of glycylation leads to perturbed distribution of axonemal dynein conformations in Ttll3−/−Ttll8−/− flagella, which impedes normal flagellar beating. Posttranslational modifications of the microtubule cytoskeleton have emerged as key regulators of cellular functions, and their perturbations have been linked to a growing number of human pathologies. Tubulin glycylation modifies microtubules specifically in cilia and flagella, but its functional and mechanistic roles remain unclear. In this study, we generated a mouse model entirely lacking tubulin glycylation. Male mice were subfertile owing to aberrant beat patterns of their sperm flagella, which impeded the straight swimming of sperm cells. Using cryo–electron tomography, we showed that lack of glycylation caused abnormal conformations of the dynein arms within sperm axonemes, providing the structural basis for the observed dysfunction. Our findings reveal the importance of microtubule glycylation for controlled flagellar beating, directional sperm swimming, and male fertility. [1]: /lookup/doi/10.1126/science.abd4914 [2]: pending:yes

Cilia are hairlike structures protruding from nearly every cell in the body. Diseases known as ciliopathies, where cilia function is disrupted, can result in a wide spectrum of disorders. However, most techniques for assessing ciliary motion rely on manual identification and tracking of cilia; this process is laborious and error-prone, and does not scale well. Even where automated ciliary motion analysis tools exist, their applicability is limited. Here, we propose an end-to-end computational machine learning pipeline that automatically identifies regions of cilia from videos, extracts patches of cilia, and classifies patients as exhibiting normal or abnormal ciliary motion. In particular, we demonstrate how convolutional LSTM are able to encode complex features while remaining sensitive enough to differentiate between a variety of motion patterns. Our framework achieves 90% with only a few hundred training epochs. We find that the combination of segmentation and classification networks in a single pipeline yields performance comparable to existing computational pipelines, while providing the additional benefit of an end-to-end, fully-automated analysis toolbox for ciliary motion.

Robots are great at a lot of things--brute force, repetition, and speed, for instance (though maybe not walking). Now add to that list one of the most human of human endeavors: smoking. That's right, researchers have built a chain-smoking robot. And not because they want a real-life Bender. Forcing a robot to smoke could help scientists at Harvard's Wyss Institute solve the mysteries of chronic obstructive pulmonary disease--the intense coughing and lung infections that plague smokers.