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 brain structure


Your brain changes at 9, 32, 66, and 83

Popular Science

Brain scans of 3,802 people show how the brain's structure changes at four major turning points. Breakthroughs, discoveries, and DIY tips sent every weekday. A team of neuroscientists at the University of Cambridge in the United Kingdom identified five broad phases of brain structure over the course of an average human life. These eras occur as the human brain rewires to support the different ways of thinking while we grow, mature, and eventually decline . In the study, they compared the brains of 3,802 people between ages zero and 90, using datasets of MRI diffusion scans .


Association of Timing and Duration of Moderate-to-Vigorous Physical Activity with Cognitive Function and Brain Aging: A Population-Based Study Using the UK Biobank

Khan, Wasif, Gu, Lin, Hammarlund, Noah, Xing, Lei, Wong, Joshua K., Fang, Ruogu

arXiv.org Artificial Intelligence

Physical activity is a modifiable lifestyle factor with potential to support cognitive resilience. However, the association of moderate-to-vigorous physical activity (MVPA) intensity, and timing, with cognitive function and region-specific brain structure remain poorly understood. We analyzed data from 45,892 UK Biobank participants aged 60 years and older with valid wrist-worn accelerometer data, cognitive testing, and structural brain MRI. MVPA was measured both continuously (mins per week) and categorically (thresholded using >=150 min/week based on WHO guidelines). Associations with cognitive performance and regional brain volumes were evaluated using multivariable linear models adjusted for demographic, socioeconomic, and health-related covariates. We conducted secondary analyses on MVPA timing and subgroup effects. Higher MVPA was associated with better performance across cognitive domains, including reasoning, memory, executive function, and processing speed. These associations persisted in fully adjusted models and were higher among participants meeting WHO guidelines. Greater MVPA was also associated with subcortical brain regions (caudate, putamen, pallidum, thalamus), as well as regional gray matter volumes involved in emotion, working memory, and perceptual processing. Secondary analyses showed that MVPA at any time of day was associated with cognitive functions and brain volume particularly in the midday-afternoon and evening. Sensitivity analysis shows consistent findings across subgroups, with evidence of dose-response relationships. Higher MVPA is associated with preserved brain structure and enhanced cognitive function in later life. Public health strategies to increase MVPA may support healthy cognitive aging and generate substantial economic benefits, with global gains projected to reach USD 760 billion annually by 2050.


Chilling discovery exposes tiny differences between psychopaths and ordinary people

Daily Mail - Science & tech

Scientists have discovered what really separates a cold-blooded psychopath from the average person. A team from the University of Pennsylvania has uncovered stark differences in brain structure that may explain why psychopaths think, feel, and behave in profoundly disturbing ways. Using MRI scans, researchers compared the brains of 39 adult men with high psychopathy scores to those of a control group, and what they found was unsettling. In psychopaths, researchers found shrunken areas in the basal ganglia, which controls movement and learning, the thalamus, the body's sensory relay station, and the cerebellum, which helps coordinate motor function. But the most striking changes were found in the orbitofrontal cortex and insular regions, areas that govern emotional regulation, impulse control, and social behavior.


CA-Diff: Collaborative Anatomy Diffusion for Brain Tissue Segmentation

Xing, Qilong, Song, Zikai, Ye, Yuteng, Chen, Yuke, Zhang, Youjia, Feng, Na, Yu, Junqing, Yang, Wei

arXiv.org Artificial Intelligence

Segmentation of brain structures from MRI is crucial for evaluating brain morphology, yet existing CNN and transformer-based methods struggle to delineate complex structures accurately. While current diffusion models have shown promise in image segmentation, they are inadequate when applied directly to brain MRI due to neglecting anatomical information. To address this, we propose Collaborative Anatomy Diffusion (CA-Diff), a framework integrating spatial anatomical features to enhance segmentation accuracy of the diffusion model. Specifically, we introduce distance field as an auxiliary anatomical condition to provide global spatial context, alongside a collaborative diffusion process to model its joint distribution with anatomical structures, enabling effective utilization of anatomical features for segmentation. Furthermore, we introduce a consistency loss to refine relationships between the distance field and anatomical structures and design a time adapted channel attention module to enhance the U-Net feature fusion procedure. Extensive experiments show that CA-Diff outperforms state-of-the-art (SOTA) methods.


Genetic Influences on Brain Aging: Analyzing Sex Differences in the UK Biobank using Structural MRI

Ardila, Karen, Mohite, Aashka, Addeh, Abdoljalil, Tyndall, Amanda V., Barha, Cindy K., Long, Quan, MacDonald, M. Ethan

arXiv.org Artificial Intelligence

Motivation: Brain aging varies significantly between sexes, yet genetic contributions to these differences remain under - explored. Goal: Identify sex - specific genetic variants linked to accelerated brain aging using structural MRI data. Approach: This study proposes implementing Brain Age Gap Estimates (BrainAGE) with sex - stratified GW AS to uncover genetic associations in T1 - weighted MRI data from the UK Biobank, complemented by Post - GW AS analyses to explore biological pathways and gene expression. Results: Sex - stratified analyses revealed neurotransmitter and mitochondrial response to cellular stress genes linked to brain aging in females and immune - related genes in males. Shared genes suggest common neurostructural roles, advancing understanding of sex - specific genetic determinants in brain aging. Impact: This study highlights the importance of sex - stratified analysis in understanding the genetic associations with brain aging. Findings pave the way for future work on personalized treatments and preventative measures for neurodegeneration based on individual genetic profiles and sex - specific risks.


Intelligence on Earth Evolved Independently at Least Twice

WIRED

The original version of this story appeared in Quanta Magazine. Humans tend to put our own intelligence on a pedestal. Our brains can do math, employ logic, explore abstractions, and think critically. But we can't claim a monopoly on thought. Among a variety of nonhuman species known to display intelligent behavior, birds have been shown time and again to have advanced cognitive abilities.


MTNeuro: A Benchmark for Evaluating Representations of Brain Structure Across Multiple Levels of Abstraction

Neural Information Processing Systems

There are multiple scales of abstraction from which we can describe the same image, depending on whether we are focusing on fine-grained details or a more global attribute of the image. In brain mapping, learning to automatically parse images to build representations of both small-scale features (e.g., the presence of cells or blood vessels) and global properties of an image (e.g., which brain region the image comes from) is a crucial and open challenge. However, most existing datasets and benchmarks for neuroanatomy consider only a single downstream task at a time. To bridge this gap, we introduce a new dataset, annotations, and multiple downstream tasks that provide diverse ways to readout information about brain structure and architecture from the same image. Our multi-task neuroimaging benchmark (MTNeuro) is built on volumetric, micrometer-resolution X-ray microtomography images spanning a large thalamocortical section of mouse brain, encompassing multiple cortical and subcortical regions.


Voxel Scene Graph for Intracranial Hemorrhage

Sanner, Antoine P., Grauhan, Nils F., Brockmann, Marc A., Othman, Ahmed E., Mukhopadhyay, Anirban

arXiv.org Artificial Intelligence

Patients with Intracranial Hemorrhage (ICH) face a potentially life-threatening condition, and patient-centered individualized treatment remains challenging due to possible clinical complications. Deep-Learning-based methods can efficiently analyze the routinely acquired head CTs to support the clinical decision-making. The majority of early work focuses on the detection and segmentation of ICH, but do not model the complex relations between ICH and adjacent brain structures. In this work, we design a tailored object detection method for ICH, which we unite with segmentation-grounded Scene Graph Generation (SGG) methods to learn a holistic representation of the clinical cerebral scene. To the best of our knowledge, this is the first application of SGG for 3D voxel images. We evaluate our method on two head-CT datasets and demonstrate that our model can recall up to 74% of clinically relevant relations. This work lays the foundation towards SGG for 3D voxel data. The generated Scene Graphs can already provide insights for the clinician, but are also valuable for all downstream tasks as a compact and interpretable representation.


The Importance of Model Inspection for Better Understanding Performance Characteristics of Graph Neural Networks

Shehata, Nairouz, Piçarra, Carolina, Kazi, Anees, Glocker, Ben

arXiv.org Artificial Intelligence

This study highlights the importance of conducting comprehensive model inspection as part of comparative performance analyses. Here, we investigate the effect of modelling choices on the feature learning characteristics of graph neural networks applied to a brain shape classification task. Specifically, we analyse the effect of using parameter-efficient, shared graph convolutional submodels compared to structure-specific, non-shared submodels. Further, we assess the effect of mesh registration as part of the data harmonisation pipeline. We find substantial differences in the feature embeddings at different layers of the models. Our results highlight that test accuracy alone is insufficient to identify important model characteristics such as encoded biases related to data source or potentially non-discriminative features learned in submodels. Our model inspection framework offers a valuable tool for practitioners to better understand performance characteristics of deep learning models in medical imaging.


SAM vs BET: A Comparative Study for Brain Extraction and Segmentation of Magnetic Resonance Images using Deep Learning

Mohapatra, Sovesh, Gosai, Advait, Schlaug, Gottfried

arXiv.org Artificial Intelligence

Brain extraction is a critical preprocessing step in various neuroimaging studies, particularly enabling accurate separation of brain from non-brain tissue and segmentation of relevant within-brain tissue compartments and structures using Magnetic Resonance Imaging (MRI) data. FSL's Brain Extraction Tool (BET), although considered the current gold standard for automatic brain extraction, presents limitations and can lead to errors such as over-extraction in brains with lesions affecting the outer parts of the brain, inaccurate differentiation between brain tissue and surrounding meninges, and susceptibility to image quality issues. Recent advances in computer vision research have led to the development of the Segment Anything Model (SAM) by Meta AI, which has demonstrated remarkable potential in zero-shot segmentation of objects in real-world scenarios. In the current paper, we present a comparative analysis of brain extraction techniques comparing SAM with a widely used and current gold standard technique called BET on a variety of brain scans with varying image qualities, MR sequences, and brain lesions affecting different brain regions. We find that SAM outperforms BET based on average Dice coefficient, IoU and accuracy metrics, particularly in cases where image quality is compromised by signal inhomogeneities, non-isotropic voxel resolutions, or the presence of brain lesions that are located near (or involve) the outer regions of the brain and the meninges. In addition, SAM has also unsurpassed segmentation properties allowing a fine grain separation of different issue compartments and different brain structures. These results suggest that SAM has the potential to emerge as a more accurate, robust and versatile tool for a broad range of brain extraction and segmentation applications.