Dyslexia, a neurodevelopmental disorder characterized by persistent reading difficulties, is often linked to reduced activity of the visual word form area in the ventral occipito-temporal cortex. Traditional approaches to studying dyslexia, such as behavioral and neuroimaging methods, have provided valuable insights but remain limited in their ability to test causal hypotheses about the underlying mechanisms of reading impairments. In this study, we use large-scale vision-language models (VLMs) to simulate dyslexia by functionally identifying and perturbing artificial analogues of word processing. Using stimuli from cognitive neuroscience, we identify visual-word-form-selective units within VLMs and demonstrate that targeted ablation of these units, unlike ablation of random units, leads to selective impairments in reading tasks while general visual and language comprehension abilities remain intact. In particular, the resulting model matches dyslexic humans' phonological deficits without a significant change in orthographic processing. Taken together, our modeling results replicate key characteristics of dyslexia and establish a computational framework for investigating reading disorders.

Brain connectivity alternations associated with brain disorders have been widely reported in resting-state functional imaging (rs-fMRI) and diffusion tensor imaging (DTI). While many dual-modal fusion methods based on graph neural networks (GNNs) have been proposed, they generally follow homogenous fusion ways ignoring rich heterogeneity of dual-modal information. To address this issue, we propose a novel method that integrates functional and structural connectivity based on heterogeneous graph neural networks (HGNNs) to better leverage the rich heterogeneity in dual-modal images. We firstly use blood oxygen level dependency and whiter matter structure information provided by rs-fMRI and DTI to establish homo-meta-path, capturing node relationships within the same modality. At the same time, we propose to establish hetero-meta-path based on structure-function coupling and brain community searching to capture relations among cross-modal nodes. Secondly, we further introduce a heterogeneous graph pooling strategy that automatically balances homo- and hetero-meta-path, effectively leveraging heterogeneous information and preventing feature confusion after pooling. Thirdly, based on the flexibility of heterogeneous graphs, we propose a heterogeneous graph data augmentation approach that can conveniently address the sample imbalance issue commonly seen in clinical diagnosis. We evaluate our method on ADNI-3 dataset for mild cognitive impairment (MCI) diagnosis. Experimental results indicate the proposed method is effective and superior to other algorithms, with a mean classification accuracy of 93.3%.

Exploring the complex structure of the human brain is crucial for understanding its functionality and diagnosing brain disorders. Thanks to advancements in neuroimaging technology, a novel approach has emerged that involves modeling the human brain as a graph-structured pattern, with different brain regions represented as nodes and the functional relationships among these regions as edges. Moreover, graph neural networks (GNNs) have demonstrated a significant advantage in mining graph-structured data. Developing GNNs to learn brain graph representations for brain disorder analysis has recently gained increasing attention. However, there is a lack of systematic survey work summarizing current research methods in this domain. In this paper, we aim to bridge this gap by reviewing brain graph learning works that utilize GNNs. We first introduce the process of brain graph modeling based on common neuroimaging data. Subsequently, we systematically categorize current works based on the type of brain graph generated and the targeted research problems. To make this research accessible to a broader range of interested researchers, we provide an overview of representative methods and commonly used datasets, along with their implementation sources. Finally, we present our insights on future research directions. The repository of this survey is available at \url{https://github.com/XuexiongLuoMQ/Awesome-Brain-Graph-Learning-with-GNNs}.

Researchers may have found a new way to target the sources of certain brain disorders. In a study led by scientists at Mass General Brigham, deep brain stimulation (DBS) was able to pinpoint dysfunctions in the brain that are responsible for four cognitive disorders: Parkinson's disease, dystonia (a muscle disorder condition that causes repetitive or twisting movements), obsessive compulsive disorder (OCD) and Tourette's syndrome. The discovery, published in Nature Neuroscience on Feb. 22, could potentially help doctors determine new treatments for these disorders. The study included 261 patients worldwide -- 70 had dystonia, 127 were Parkinson's disease patients, 50 had been diagnosed with OCD and 14 had Tourette's syndrome. The researchers implanted electrodes into the brains of each participant and used special software to determine which brain circuits were dysfunctional in each of the four disorders.

The human brain can be considered as complex networks, composed of various regions that continuously exchange their information with each other, forming the brain network graph, from which nodes and edges are extracted using resting-state functional magnetic resonance imaging (rs-fMRI). Therefore, this graph can potentially depict abnormal patterns that have emerged under the influence of brain disorders. So far, numerous studies have attempted to find embeddings for brain network graphs and subsequently classify samples with brain disorders from healthy ones, which include limitations such as: not considering the relationship between samples, not utilizing phenotype information, lack of temporal analysis, using static functional connectivity (FC) instead of dynamic ones and using a fixed graph structure. We propose a hierarchical dynamic graph representation learning (HDGL) model, which is the first model designed to address all the aforementioned challenges. HDGL consists of two levels, where at the first level, it constructs brain network graphs and learns their spatial and temporal embeddings, and at the second level, it forms population graphs and performs classification after embedding learning. Furthermore, based on how these two levels are trained, four methods have been introduced, some of which are suggested for reducing memory complexity. We evaluated the performance of the proposed model on the ABIDE and ADHD-200 datasets, and the results indicate the improvement of this model compared to several state-of-the-art models in terms of various evaluation metrics.

In recent years, functional magnetic resonance imaging has emerged as a powerful tool for investigating the human brain's functional connectivity networks. Related studies demonstrate that functional connectivity networks in the human brain can help to improve the efficiency of diagnosing neurological disorders. However, there still exist two challenges that limit the progress of functional neuroimaging. Firstly, there exists an abundance of noise and redundant information in functional connectivity data, resulting in poor performance. Secondly, existing brain network models have tended to prioritize either classification performance or the interpretation of neuroscience findings behind the learned models. To deal with these challenges, this paper proposes a novel brain graph learning framework called Template-induced Brain Graph Learning (TiBGL), which has both discriminative and interpretable abilities. Motivated by the related medical findings on functional connectivites, TiBGL proposes template-induced brain graph learning to extract template brain graphs for all groups. The template graph can be regarded as an augmentation process on brain networks that removes noise information and highlights important connectivity patterns. To simultaneously support the tasks of discrimination and interpretation, TiBGL further develops template-induced convolutional neural network and template-induced brain interpretation analysis. Especially, the former fuses rich information from brain graphs and template brain graphs for brain disorder tasks, and the latter can provide insightful connectivity patterns related to brain disorders based on template brain graphs. Experimental results on three real-world datasets show that the proposed TiBGL can achieve superior performance compared with nine state-of-the-art methods and keep coherent with neuroscience findings in recent literatures.

Brain disorders in the early and late life of humans potentially share pathological alterations in brain functions. However, the key evidence from neuroimaging data for pathological commonness remains unrevealed. To explore this hypothesis, we build a deep learning model, using multi-site functional magnetic resonance imaging data (N=4,410, 6 sites), for classifying 5 different brain disorders from healthy controls, with a set of common features. Our model achieves 62.6 1.9% overall classification accuracy on data from the 6 investigated sites and detects a set of commonly affected functional subnetworks at different spatial scales, including default mode, executive control, visual, and limbic networks. In the deep-layer feature representation for individual data, we observe young and aging patients with disorders are continuously distributed, which is in line with the clinical concept of the "spectrum of disorders". The revealed spectrum underlying early-and late-life brain disorders promotes the understanding of disorder comorbidities in the lifespan.

Non-invasive brain imaging techniques allow understanding the behavior and macro changes in the brain to determine the progress of a disease. However, computational pathology provides a deeper understanding of brain disorders at cellular level, able to consolidate a diagnosis and make the bridge between the medical image and the omics analysis. In traditional histopathology, histology slides are visually inspected, under the microscope, by trained pathologists. This process is time-consuming and labor-intensive; therefore, the emergence of Computational Pathology has triggered great hope to ease this tedious task and make it more robust. This chapter focuses on understanding the state-of-the-art machine learning techniques used to analyze whole slide images within the context of brain disorders. We present a selective set of remarkable machine learning algorithms providing discriminative approaches and quality results on brain disorders. These methodologies are applied to different tasks, such as monitoring mechanisms contributing to disease progression and patient survival rates, analyzing morphological phenotypes for classification and quantitative assessment of disease, improving clinical care, diagnosing tumor specimens, and intraoperative interpretation. Thanks to the recent progress in machine learning algorithms for high-content image processing, computational pathology marks the rise of a new generation of medical discoveries and clinical protocols, including in brain disorders.

Nowadays, many people worldwide suffer from brain disorders, and their health is in danger. So far, numerous methods have been proposed for the diagnosis of Schizophrenia (SZ) and attention deficit hyperactivity disorder (ADHD), among which functional magnetic resonance imaging (fMRI) modalities are known as a popular method among physicians. This paper presents an SZ and ADHD intelligent detection method of resting-state fMRI (rs-fMRI) modality using a new deep learning method. The University of California Los Angeles dataset, which contains the rs-fMRI modalities of SZ and ADHD patients, has been used for experiments. The FMRIB software library toolbox first performed preprocessing on rs-fMRI data. Then, a convolutional Autoencoder model with the proposed number of layers is used to extract features from rs-fMRI data. In the classification step, a new fuzzy method called interval type-2 fuzzy regression (IT2FR) is introduced and then optimized by genetic algorithm, particle swarm optimization, and gray wolf optimization (GWO) techniques. Also, the results of IT2FR methods are compared with multilayer perceptron, k-nearest neighbors, support vector machine, random forest, and decision tree, and adaptive neuro-fuzzy inference system methods. The experiment results show that the IT2FR method with the GWO optimization algorithm has achieved satisfactory results compared to other classifier methods. Finally, the proposed classification technique was able to provide 72.71% accuracy.

"Neurons talk to each other in part via electrical signals, and a therapeutic neural implant produces electrical stimulation – like a pacemaker for the brain," said Xilin Liu, lead researcher and assistant professor in the Faculty of Applied Science and Engineering at the University of Toronto. "In cases of tremors or seizures, the stimulation attempts to restore the neurons to a normal condition," he continued. Liu mentioned that the neural implant would turn the neural networks on and off like a switch, or like restarting a computer. He also stated the complexity of the research project, noting that it won't be as simple as it sounds, and that researchers are still trying to comprehend the complexity of the project. "Scientists don't fully understand how it works yet," said Liu, who is also part of the neurotechnology center CRANIA, a collaboration between the University of Toronto and the University Health Network.