brain data
Brain-Informed Fine-Tuning for Improved Multilingual Understanding in Language Models
Recent studies have demonstrated that fine-tuning language models with brain data can improve their semantic understanding, although these findings have so far been limited to English. Interestingly, similar to the shared multilingual embedding space of pretrained multilingual language models, human studies provide strong evidence for a shared semantic system in bilingual individuals. Here, we investigate whether fine-tuning language models with bilingual brain data changes model representations in a way that improves them across multiple languages. To test this, we fine-tune monolingual and multilingual language models using brain activity recorded while bilingual participants read stories in English and Chinese. We then evaluate how well these representations generalize to the bilingual participants' first language, their second language, and several other languages that the participants are not fluent in. We assess the fine-tuned language models on brain encoding performance and downstream NLP tasks. Our results show that bilingual brain-informed fine-tuned language models outperform their vanilla (pretrained) counterparts in both brain encoding performance and most downstream NLP tasks across multiple languages. These findings suggest that brain-informed fine-tuning improves multilingual understanding in language models, offering a bridge between cognitive neuroscience and NLP research. We make our code publicly available.
Brain-Informed Fine-Tuning for Improved Multilingual Understanding in Language Models
Recent studies have demonstrated that fine-tuning language models with brain data can improve their semantic understanding, although these findings have so far been limited to English. Interestingly, similar to the shared multilingual embedding space of pretrained multilingual language models, human studies provide strong evidence for a shared semantic system in bilingual individuals. Here, we investigate whether fine-tuning language models with bilingual brain data changes model representations in a way that improves them across multiple languages. To test this, we fine-tune monolingual and multilingual language models using brain activity recorded while bilingual participants read stories in English and Chinese. We then evaluate how well these representations generalize to the bilingual participants' first language, their second language, and several other languages that the participants are not fluent in. We assess the fine-tuned language models on brain encoding performance and downstream NLP tasks. Our results show that bilingual brain-informed fine-tuned language models outperform their vanilla (pretrained) counterparts in both brain encoding performance and most downstream NLP tasks across multiple languages. These findings suggest that brain-informed fine-tuning improves multilingual understanding in language models, offering a bridge between cognitive neuroscience and NLP research. We make our code publicly available.
Brain-tuning Improves Generalizability and Efficiency of Brain Alignment in Speech Models
Pretrained language models are remarkably effective in aligning with human brain responses elicited by natural language stimuli, positioning them as promising model organisms for studying language processing in the brain. However, existing approaches for both estimating and improving this brain alignment are participant-dependent and highly affected by the amount of data available per participant, hindering both generalization to new participants and population-level analyses. In this work, we address these limitations by introducing a scalable, generalizable brain-tuning method, in which we fine-tune pretrained speech language models to jointly predict fMRI responses from multiple participants. We demonstrate that the resulting brain-tuned models exhibit strong individual brain alignment while generalizing across participants. Specifically, our method leads to 1) a 5-fold decrease in the amount of fMRI data needed to predict brain data from new participants, 2) up to a 50\% increase in the overall brain alignment, and 3) strong generalization to new unseen datasets. Furthermore, this multi-participant brain-tuning additionally improves downstream performance on semantic tasks, suggesting that training using brain data from multiple participants leads to more generalizable semantic representations. Taken together, these findings demonstrate a bidirectional benefit between neuroscience and AI, helping bridge the gap between the two fields.
Predicting Brain Morphogenesis via Physics-Transfer Learning
Zhao, Yingjie, Song, Yicheng, Xu, Fan, Xu, Zhiping
Brain morphology is shaped by genetic and mechanical factors and is linked to biological development and diseases. Its fractal-like features, regional anisotropy, and complex curvature distributions hinder quantitative insights in medical inspections. Recognizing that the underlying elastic instability and bifurcation share the same physics as simple geometries such as spheres and ellipses, we developed a physics-transfer learning framework to address the geometrical complexity. To overcome the challenge of data scarcity, we constructed a digital library of high-fidelity continuum mechanics modeling that both describes and predicts the developmental processes of brain growth and disease. The physics of nonlinear elasticity from simple geometries is embedded into a neural network and applied to brain models. This physics-transfer approach demonstrates remarkable performance in feature characterization and morphogenesis prediction, highlighting the pivotal role of localized deformation in dominating over the background geometry. The data-driven framework also provides a library of reduced-dimensional evolutionary representations that capture the essential physics of the highly folded cerebral cortex. Validation through medical images and domain expertise underscores the deployment of digital-twin technology in comprehending the morphological complexity of the brain.
Revealing Neurocognitive and Behavioral Patterns by Unsupervised Manifold Learning from Dynamic Brain Data
Zhou, Zixia, Liu, Junyan, Wu, Wei Emma, Fang, Ruogu, Liu, Sheng, Wei, Qingyue, Yan, Rui, Guo, Yi, Tao, Qian, Wang, Yuanyuan, Islam, Md Tauhidul, Xing, Lei
Dynamic brain data, teeming with biological and functional insights, are becoming increasingly accessible through advanced measurements, providing a gateway to understanding the inner workings of the brain in living subjects. However, the vast size and intricate complexity of the data also pose a daunting challenge in reliably extracting meaningful information across various data sources. This paper introduces a generalizable unsupervised deep manifold learning for exploration of neurocognitive and behavioral patterns. Unlike existing methods that extract patterns directly from the input data as in the existing methods, the proposed Brain-dynamic Convolutional-Network-based Embedding (BCNE) seeks to capture the brain-state trajectories by deciphering the temporospatial correlations within the data and subsequently applying manifold learning to this correlative representation. The performance of BCNE is showcased through the analysis of several important dynamic brain datasets. The results, both visual and quantitative, reveal a diverse array of intriguing and interpretable patterns. BCNE effectively delineates scene transitions, underscores the involvement of different brain regions in memory and narrative processing, distinguishes various stages of dynamic learning processes, and identifies differences between active and passive behaviors. BCNE provides an effective tool for exploring general neuroscience inquiries or individual-specific patterns.
Fiduciary AI for the Future of Brain-Technology Interactions
Bhattacharjee, Abhishek, Pilkington, Jack, Farahany, Nita
Brain foundation models represent a new frontier in AI: instead of processing text or images, these models interpret real-time neural signals from EEG, fMRI, and other neurotechnologies. When integrated with brain-computer interfaces (BCIs), they may enable transformative applications-from thought controlled devices to neuroprosthetics-by interpreting and acting on brain activity in milliseconds. However, these same systems pose unprecedented risks, including the exploitation of subconscious neural signals and the erosion of cognitive liberty. Users cannot easily observe or control how their brain signals are interpreted, creating power asymmetries that are vulnerable to manipulation. This paper proposes embedding fiduciary duties-loyalty, care, and confidentiality-directly into BCI-integrated brain foundation models through technical design. Drawing on legal traditions and recent advancements in AI alignment techniques, we outline implementable architectural and governance mechanisms to ensure these systems act in users' best interests. Placing brain foundation models on a fiduciary footing is essential to realizing their potential without compromising self-determination.
Brain Foundation Models: A Survey on Advancements in Neural Signal Processing and Brain Discovery
Zhou, Xinliang, Liu, Chenyu, Chen, Zhisheng, Wang, Kun, Ding, Yi, Jia, Ziyu, Wen, Qingsong
Brain foundation models (BFMs) have emerged as a transformative paradigm in computational neuroscience, offering a revolutionary framework for processing diverse neural signals across different brain-related tasks. These models leverage large-scale pre-training techniques, allowing them to generalize effectively across multiple scenarios, tasks, and modalities, thus overcoming the traditional limitations faced by conventional artificial intelligence (AI) approaches in understanding complex brain data. By tapping into the power of pretrained models, BFMs provide a means to process neural data in a more unified manner, enabling advanced analysis and discovery in the field of neuroscience. In this survey, we define BFMs for the first time, providing a clear and concise framework for constructing and utilizing these models in various applications. We also examine the key principles and methodologies for developing these models, shedding light on how they transform the landscape of neural signal processing. This survey presents a comprehensive review of the latest advancements in BFMs, covering the most recent methodological innovations, novel views of application areas, and challenges in the field. Notably, we highlight the future directions and key challenges that need to be addressed to fully realize the potential of BFMs. These challenges include improving the quality of brain data, optimizing model architecture for better generalization, increasing training efficiency, and enhancing the interpretability and robustness of BFMs in real-world applications.
BrainWavLM: Fine-tuning Speech Representations with Brain Responses to Language
Vattikonda, Nishitha, Vaidya, Aditya R., Antonello, Richard J., Huth, Alexander G.
Speech encoding models use auditory representations to predict how the human brain responds to spoken language stimuli. Most performant encoding models linearly map the hidden states of artificial neural networks to brain data, but this linear restriction may limit their effectiveness. In this work, we use low-rank adaptation (LoRA) to fine-tune a WavLM-based encoding model end-to-end on a brain encoding objective, producing a model we name BrainWavLM. We show that fine-tuning across all of cortex improves average encoding performance with greater stability than without LoRA. This improvement comes at the expense of low-level regions like auditory cortex (AC), but selectively fine-tuning on these areas improves performance in AC, while largely retaining gains made in the rest of cortex. Fine-tuned models generalized across subjects, indicating that they learned robust brain-like representations of the speech stimuli. Finally, by training linear probes, we showed that the brain data strengthened semantic representations in the speech model without any explicit annotations. Our results demonstrate that brain fine-tuning produces best-in-class speech encoding models, and that non-linear methods have the potential to bridge the gap between artificial and biological representations of semantics.
Review for NeurIPS paper: Modeling Task Effects on Meaning Representation in the Brain via Zero-Shot MEG Prediction
Summary and Contributions: This paper presents a re-analysis of the MEG experiment of Sudre et al (2012), where participants were tasked with responding to a question about the meaning of an object concept word (e.g. In the original Sudre et al analysis, the focus was on testing the predictive power of different perceptual and semantic feature models of the concept word for the MEG data. In the current study, the focus is on the role of the task question that precedes the concept word, and in particular whether and how the semantics of the task question modulates the subsequent processing and neural activity time-locked to the stimulus word. This is an interesting neurocognitive question, as it sheds light on how lexical-semantic representation and access can be modulated by the preceding context, and how the timing of processing of the target concept word that is independent of the task demands relates to the timing of the processing that involves integrating that conceptual knowledge with the task requirements in order to respond on the task. To analyze the data, the authors construct vector-based semantic models of both the concept words and the task questions, using human responses from separate questions and concepts where the participants rated the truth of the task questions for the concepts.