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US's new scramble for Africa is biomedical imperialism

Al Jazeera

US's new scramble for Africa is biomedical imperialism Late in February, Zimbabwe pulled out of a proposed $367m United States health funding agreement after objecting to provisions requiring broad American access to sensitive health data. The five-year programme was presented as support for HIV/AIDS, tuberculosis, malaria and epidemic preparedness efforts. However, the terms demanded extensive sharing of national health intelligence, including epidemiological surveillance data and pathogen samples, while offering no binding guarantees that Zimbabwe would receive equitable access to medical technologies developed from them. Harare called the proposal an "unequal exchange", warning that Zimbabwe risked supplying the "raw materials for scientific discovery" while the resulting benefits could remain concentrated in the United States and global pharmaceutical firms. Critics increasingly describe this pattern as biomedical extractivism: a toxic combination of exploitative research practices and colonial thinking that reinforces Western dominance.


GV-Rep: A Large-Scale Dataset for Genetic Variant Representation Learning

Neural Information Processing Systems

The development of deep learning approaches for modeling these multifactorial effects of GVs is still in its nascent stages, primarily due to the lack of comprehensive datasets that capture the intricate relationships between GVs and their downstream effects on complex traits.





xTrimoGene: An Efficient and Scalable Representation Learner for Single-Cell RNA-Seq Data

Neural Information Processing Systems

Advances in high-throughput sequencing technology have led to significant progress in measuring gene expressions at the single-cell level. The amount of publicly available single-cell RNA-seq (scRNA-seq) data is already surpassing 50M records for humans with each record measuring 20,000 genes.





Appendix ProteinShake: Building datasets and benchmarks for deep learning on protein structures

Neural Information Processing Systems

Table 3: Comparison of models trained with different representations of protein structure across various tasks, on a random data split . The optimal choice of representation depends on the task. Shown are mean and standard deviation across four runs with different seeds. Table 4: Comparison of models trained with different representations of protein structure across various tasks, on a sequence data split . Table 5: Comparison of models trained with different representations of protein structure across various tasks, on a structure data split .