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Bifurcations and loss jumps in RNN training

Neural Information Processing Systems

Recurrent neural networks (RNNs) are popular machine learning tools for modeling and forecasting sequential data and for inferring dynamical systems (DS) from observed time series. Concepts from DS theory (DST) have variously been used to further our understanding of both, how trained RNNs solve complex tasks, and the training process itself. Bifurcations are particularly important phenomena in DS, including RNNs, that refer to topological (qualitative) changes in a system's dynamical behavior as one or more of its parameters are varied. Knowing the bifurcation structure of an RNN will thus allow to deduce many of its computational and dynamical properties, like its sensitivity to parameter variations or its behavior during training. In particular, bifurcations may account for sudden loss jumps observed in RNN training that could severely impede the training process.


Back to the Continuous Attractor

Neural Information Processing Systems

Continuous attractors offer a unique class of solutions for storing continuous-valued variables in recurrent system states for indefinitely long time intervals.Unfortunately, continuous attractors suffer from severe structural instability in general---they are destroyed by most infinitesimal changes of the dynamical law that defines them.This fragility limits their utility especially in biological systems as their recurrent dynamics are subject to constant perturbations.We observe that the bifurcations from continuous attractors in theoretical neuroscience models display various structurally stable forms.Although their asymptotic behaviors to maintain memory are categorically distinct, their finite-time behaviors are similar.We build on the persistent manifold theory to explain the commonalities between bifurcations from and approximations of continuous attractors.Fast-slow decomposition analysis uncovers the existence of a persistent slow manifold that survives the seemingly destructive bifurcation, relating the flow within the manifold to the size of the perturbation. Moreover, this allows the bounding of the memory error of these approximations of continuous attractors.Finally, we train recurrent neural networks on analog memory tasks to support the appearance of these systems as solutions and their generalization capabilities.Therefore, we conclude that continuous attractors are functionally robust and remain useful as a universal analogy for understanding analog memory.


RefTr: Recurrent Refinement of Confluent Trajectories for 3D Vascular Tree Centerline Graphs

Naeem, Roman, Hagerman, David, Alvén, Jennifer, Kahl, Fredrik

arXiv.org Artificial Intelligence

Tubular trees, such as blood vessels and lung airways, are essential for material transport within the human body. Accurately detecting their centerlines with correct tree topology is critical for clinical tasks such as diagnosis, treatment planning, and surgical navigation. In these applications, maintaining high recall is crucial, as missing small branches can result in fatal mistakes caused by incomplete assessments or undetected abnormalities. We present RefTr, a 3D image-to-graph model for centerline generation of vascular trees via recurrent refinement of confluent trajectories. RefTr uses a Producer-Refiner architecture based on a Transformer decoder, where the Producer proposes a set of initial confluent trajectories that are recurrently refined by the Refiner to produce final trajectories, which forms the centerline graph. The confluent trajectory representation enables refinement of complete trajectories while explicitly enforcing a valid tree topology. The recurrent refinement scheme improves precision and reuses the same Refiner block across multiple steps, yielding a 2.4x reduction in decoder parameters compared to previous SOTA. We also introduce an efficient non-maximum suppression algorithm for spatial tree graphs to merge duplicate branches and boost precision. Across multiple public centerline datasets, RefTr achieves superior recall and comparable precision to previous SOTA, while offering faster inference and substantially fewer parameters, demonstrating its potential as a new state-of-the-art framework for vascular tree analysis in 3D medical imaging.



Interpretable Nonlinear Dynamic Modeling of Neural Trajectories

Yuan Zhao, Il Memming Park

Neural Information Processing Systems

A central challenge in neuroscience is understanding how neural system implements computation through its dynamics. We propose a nonlinear time series model aimed at characterizing interpretable dynamics from neural trajectories. Our model assumes low-dimensional continuous dynamics in a finite volume. It incorporates a prior assumption about globally contractional dynamics to avoid overly enthusiastic extrapolation outside of the support of observed trajectories. We show that our model can recover qualitative features of the phase portrait such as attractors, slow points, and bifurcations, while also producing reliable long-term future predictions in a variety of dynamical models and in real neural data.