Animal behavior is driven by multiple brain regions working in parallel with distinct control policies. We present a biologically plausible model of off-policy reinforcement learning in the basal ganglia, which enables learning in such an architecture. The model accounts for action-related modulation of dopamine activity that is not captured by previous models that implement on-policy algorithms. In particular, the model predicts that dopamine activity signals a combination of reward prediction error (as in classic models) and action surprise, a measure of how unexpected an action is relative to the basal ganglia's current policy. In the presence of the action surprise term, the model implements an approximate form of $Q$-learning.

Single-cell RNA sequencing has transformed our ability to identify diverse cell types and their transcriptomic signatures. However, annotating these signatures-especially those involving poorly characterized genes-remains a major challenge. Traditional methods, such as Gene Set Enrichment Analysis (GSEA), depend on well-curated annotations and often perform poorly in these contexts. Large Language Models (LLMs) offer a promising alternative but struggle to represent complex biological knowledge within structured ontologies. To address this, we present BRAINCELL-AID (BRAINCELL-AID: https://biodataai.uth.edu/BRAINCELL-AID), a novel multi-agent AI system that integrates free-text descriptions with ontology labels to enable more accurate and robust gene set annotation. By incorporating retrieval-augmented generation (RAG), we developed a robust agentic workflow that refines predictions using relevant PubMed literature, reducing hallucinations and enhancing interpretability. Using this workflow, we achieved correct annotations for 77% of mouse gene sets among their top predictions. Applying this approach, we annotated 5,322 brain cell clusters from the comprehensive mouse brain cell atlas generated by the BRAIN Initiative Cell Census Network, enabling novel insights into brain cell function by identifying region-specific gene co-expression patterns and inferring functional roles of gene ensembles. BRAINCELL-AID also identifies Basal Ganglia-related cell types with neurologically meaningful descriptions. Hence, we create a valuable resource to support community-driven cell type annotation.

Animal behavior is driven by multiple brain regions working in parallel with distinct control policies.

Personality detection from text aims to infer an individual's personality traits based on linguistic patterns. However, existing machine learning approaches often struggle to capture contextual information spanning multiple posts and tend to fall short in extracting representative and robust features in semantically sparse environments. This paper presents HIPPD, a brain-inspired framework for personality detection that emulates the hierarchical information processing of the human brain. HIPPD utilises a large language model to simulate the cerebral cortex, enabling global semantic reasoning and deep feature abstraction. A dynamic memory module, modelled after the prefrontal cortex, performs adaptive gating and selective retention of critical features, with all adjustments driven by dopaminergic prediction error feedback. Subsequently, a set of specialised lightweight models, emulating the basal ganglia, are dynamically routed via a strict winner-takes-all mechanism to capture the personality-related patterns they are most proficient at recognising. Extensive experiments on the Kaggle and Pandora datasets demonstrate that HIPPD consistently outperforms state-of-the-art baselines.

Animal behavior is driven by multiple brain regions working in parallel with distinct control policies.

In the age of generative AI and ubiquitous digital tools, human cognition faces a structural paradox: as external aids become more capable, internal memory systems risk atrophy. Drawing on neuroscience and cognitive psychology, this paper examines how heavy reliance on AI systems and discovery-based pedagogies may impair the consolidation of declarative and procedural memory -- systems essential for expertise, critical thinking, and long-term retention. We review how tools like ChatGPT and calculators can short-circuit the retrieval, error correction, and schema-building processes necessary for robust neural encoding. Notably, we highlight striking parallels between deep learning phenomena such as "grokking" and the neuroscience of overlearning and intuition. Empirical studies are discussed showing how premature reliance on AI during learning inhibits proceduralization and intuitive mastery. We argue that effective human-AI interaction depends on strong internal models -- biological "schemata" and neural manifolds -- that enable users to evaluate, refine, and guide AI output. The paper concludes with policy implications for education and workforce training in the age of large language models.

Animal behavior is driven by multiple brain regions working in parallel with distinct control policies. We present a biologically plausible model of off-policy reinforcement learning in the basal ganglia, which enables learning in such an architecture. The model accounts for action-related modulation of dopamine activity that is not captured by previous models that implement on-policy algorithms. In particular, the model predicts that dopamine activity signals a combination of reward prediction error (as in classic models) and "action surprise," a measure of how unexpected an action is relative to the basal ganglia's current policy. In the presence of the action surprise term, the model implements an approximate form of Q -learning.

Motivation. While recent studies show high accuracy in the classification of Alzheimer's disease using deep neural networks, the underlying learned concepts have not been investigated. Goals. To systematically identify changes in brain regions through concepts learned by the deep neural network for model validation. Approach. Using quantitative R2* maps we separated Alzheimer's patients (n=117) from normal controls (n=219) by using a convolutional neural network and systematically investigated the learned concepts using Concept Relevance Propagation and compared these results to a conventional region of interest-based analysis. Results. In line with established histological findings and the region of interest-based analyses, highly relevant concepts were primarily found in and adjacent to the basal ganglia. Impact. The identification of concepts learned by deep neural networks for disease classification enables validation of the models and could potentially improve reliability.

The capabilities of transformer networks such as ChatGPT and other Large Language Models (LLMs) have captured the world's attention. The crucial computational mechanism underlying their performance relies on transforming a complete input sequence - for example, all the words in a sentence into a long "encoding vector" - that allows transformers to learn long-range temporal dependencies in naturalistic sequences. Specifically, "self-attention" applied to this encoding vector enhances temporal context in transformers by computing associations between pairs of words in the input sequence. We suggest that waves of neural activity, traveling across single cortical regions or across multiple regions at the whole-brain scale, could implement a similar encoding principle. By encapsulating recent input history into a single spatial pattern at each moment in time, cortical waves may enable temporal context to be extracted from sequences of sensory inputs, the same computational principle used in transformers.

Designing controllers to achieve natural motor capabilities for multi-joint robots is a significant challenge. However, animals in nature are naturally with basic motor abilities and can master various complex motor skills through acquired learning. On the basis of analyzing the mechanism of the central motor system in mammals, we propose a novel pre-training reinforcement learning algorithm that enables robots to learn rich motor skills and apply them to complex task environments without relying on external data. We first design a skill based network similar to the cerebellum by utilizing the selection mechanism of voluntary movements in the basal ganglia and the basic motor regulation ability of the cerebellum. Subsequently, by imitating the structure of advanced centers in the central motor system, we propose a high-level policy to generate different skill combinations, thereby enabling the robot to acquire natural motor abilities. We conduct experiments on 4 types of robots and 22 task environments, and the results show that the proposed method can enable different types of robots to achieve flexible motor skills. Overall, our research provides a promising framework for the design of neural network motor controllers.