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Out-of-Distribution Generalized Dynamic Graph Neural Network for Human Albumin Prediction

Zhang, Zeyang, Li, Xingwang, Teng, Fei, Lin, Ning, Zhu, Xueling, Wang, Xin, Zhu, Wenwu

arXiv.org Artificial Intelligence

Human albumin is essential for indicating the body's overall health. Accurately predicting plasma albumin levels and determining appropriate doses are urgent clinical challenges, particularly in critically ill patients, to maintain optimal blood levels. However, human albumin prediction is non-trivial that has to leverage the dynamics of biochemical markers as well as the experience of treating patients. Moreover, the problem of distribution shift is often encountered in real clinical data, which may lead to a decline in the model prediction performance and reduce the reliability of the model's application. In this paper, we propose a framework named Out-of-Distribution Generalized Dynamic Graph Neural Network for Human Albumin Prediction (DyG-HAP), which is able to provide accurate albumin predictions for Intensity Care Unit (ICU) patients during hospitalization. We first model human albumin prediction as a dynamic graph regression problem to model the dynamics and patient relationship. Then, we propose a disentangled dynamic graph attention mechanism to capture and disentangle the patterns whose relationship to labels under distribution shifts is invariant and variant respectively. Last, we propose an invariant dynamic graph regression method to encourage the model to rely on invariant patterns to make predictions. Moreover, we propose a dataset named Albumin level testing and nutritional dosing data for Intensive Care (ANIC) for evaluation. Extensive experiments demonstrate the superiority of our method compared to several baseline methods in human albumin prediction.


Causal thinking for decision making on Electronic Health Records: why and how

Doutreligne, Matthieu, Struja, Tristan, Abecassis, Judith, Morgand, Claire, Celi, Leo Anthony, Varoquaux, Gaël

arXiv.org Machine Learning

Accurate predictions, as with machine learning, may not suffice to provide optimal healthcare for every patient. Indeed, prediction can be driven by shortcuts in the data, such as racial biases. Causal thinking is needed for data-driven decisions. Here, we give an introduction to the key elements, focusing on routinely-collected data, electronic health records (EHRs) and claims data. Using such data to assess the value of an intervention requires care: temporal dependencies and existing practices easily confound the causal effect. We present a step-by-step framework to help build valid decision making from real-life patient records by emulating a randomized trial before individualizing decisions, eg with machine learning. Our framework highlights the most important pitfalls and considerations in analysing EHRs or claims data to draw causal conclusions. We illustrate the various choices in studying the effect of albumin on sepsis mortality in the Medical Information Mart for Intensive Care database (MIMIC-IV). We study the impact of various choices at every step, from feature extraction to causal-estimator selection. In a tutorial spirit, the code and the data are openly available.


Albumin as a Blood Biomarker of Aging

#artificialintelligence

The application of artificial intelligence to the study of aging in 2013 led to the development of tools for measuring biological age and predicting mortality, which is defined as the frequency of death in a defined population during a specified interval [1]. Public access to these tools creates the opportunity for self-studies, allowing individuals to gain insights into how their bodies would respond to diet, lifestyle, exercise, and supplementation interventions aimed at changing their biological ages or risks of death. In 2013, Steve Horvath developed a highly accurate artificial intelligence-driven method of determining biological age [2]. This long-awaited development ushered in a new era of aging research. For the first time, it enabled researchers in academia and industry to measure the results of their work in terms of changes in biological age. For example, in 2019, Dr. Greg Fahy and his colleagues carried out an experiment aimed at regenerating the thymus.


Mortality Prediction with Adaptive Feature Importance Recalibration for Peritoneal Dialysis Patients: a deep-learning-based study on a real-world longitudinal follow-up dataset

Ma, Liantao, Zhang, Chaohe, Gao, Junyi, Jiao, Xianfeng, Yu, Zhihao, Ma, Xinyu, Wang, Yasha, Tang, Wen, Zhao, Xinju, Ruan, Wenjie, Wang, Tao

arXiv.org Artificial Intelligence

Objective: Peritoneal Dialysis (PD) is one of the most widely used life-supporting therapies for patients with End-Stage Renal Disease (ESRD). Predicting mortality risk and identifying modifiable risk factors based on the Electronic Medical Records (EMR) collected along with the follow-up visits are of great importance for personalized medicine and early intervention. Here, our objective is to develop a deep learning model for a real-time, individualized, and interpretable mortality prediction model - AICare. Method and Materials: Our proposed model consists of a multi-channel feature extraction module and an adaptive feature importance recalibration module. AICare explicitly identifies the key features that strongly indicate the outcome prediction for each patient to build the health status embedding individually. This study has collected 13,091 clinical follow-up visits and demographic data of 656 PD patients. To verify the application universality, this study has also collected 4,789 visits of 1,363 hemodialysis dialysis (HD) as an additional experiment dataset to test the prediction performance, which will be discussed in the Appendix. Results: 1) Experiment results show that AICare achieves 81.6%/74.3% AUROC and 47.2%/32.5% AUPRC for the 1-year mortality prediction task on PD/HD dataset respectively, which outperforms the state-of-the-art comparative deep learning models. 2) This study first provides a comprehensive elucidation of the relationship between the causes of mortality in patients with PD and clinical features based on an end-to-end deep learning model. 3) This study first reveals the pattern of variation in the importance of each feature in the mortality prediction based on built-in interpretability. 4) We develop a practical AI-Doctor interaction system to visualize the trajectory of patients' health status and risk indicators.


ggRandomForests: Exploring Random Forest Survival

Ehrlinger, John

arXiv.org Machine Learning

Random forest (Leo Breiman 2001a) (RF) is a non-parametric statistical method requiring no distributional assumptions on covariate relation to the response. RF is a robust, nonlinear technique that optimizes predictive accuracy by fitting an ensemble of trees to stabilize model estimates. Random survival forests (RSF) (Ishwaran and Kogalur 2007; Ishwaran et al. 2008) are an extension of Breimans RF techniques allowing efficient nonparametric analysis of time to event data. The randomForestSRC package (Ishwaran and Kogalur 2014) is a unified treatment of Breimans random forest for survival, regression and classification problems. Predictive accuracy makes RF an attractive alternative to parametric models, though complexity and interpretability of the forest hinder wider application of the method. We introduce the ggRandomForests package, tools for visually understand random forest models grown in R (R Core Team 2014) with the randomForestSRC package. The ggRandomForests package is structured to extract intermediate data objects from randomForestSRC objects and generate figures using the ggplot2 (Wickham 2009) graphics package. This document is structured as a tutorial for building random forest for survival with the randomForestSRC package and using the ggRandomForests package for investigating how the forest is constructed. We analyse the Primary Biliary Cirrhosis of the liver data from a clinical trial at the Mayo Clinic (Fleming and Harrington 1991). Our aim is to demonstrate the strength of using Random Forest methods for both prediction and information retrieval, specifically in time to event data settings.