Recent advances in techniques for monitoring and perturbing neural populations have greatly enhanced our ability to study circuits in the brain. In particular, two-photon holographic optogenetics now enables precise photostimulation of experimenter-specified groups of individual neurons, while simultaneous two-photon calcium imaging enables the measurement of ongoing and induced activity across the neural population. Despite the enormous space of potential photostimulation patterns and the time-consuming nature of photostimulation experiments, very little algorithmic work has been done to determine the most effective photostimulation patterns for identifying the neural population dynamics. Here, we develop methods to efficiently select which neurons to stimulate such that the resulting neural responses will best inform a dynamical model of the neural population activity. Using neural population responses to photostimulation in mouse motor cortex, we demonstrate the efficacy of a low-rank linear dynamical systems model, and develop an active learning procedure which takes advantage of low-rank structure to determine informative photostimulation patterns. We demonstrate our approach on both real and synthetic data, obtaining in some cases as much as a two-fold reduction in the amount of data required to reach a given predictive power. Our active stimulation design method is based on a novel active learning procedure for low-rank regression, which may be of independent interest.

In situations where the solution of a high-fidelity dynamical system needs to be evaluated repeatedly, over a vast pool of parametric configurations and in absence of access to the underlying governing equations, data-driven model reduction techniques are preferable. We propose a novel active learning approach to build a parametric data-driven reduced-order model (ROM) by greedily picking the most important parameter samples from the parameter domain. As a result, during the ROM construction phase, the number of high-fidelity solutions dynamically grow in a principled fashion. The high-fidelity solution snapshots are expressed in several parameter-specific linear subspaces, with the help of proper orthogonal decomposition (POD), and the relative distance between these subspaces is used as a guiding mechanism to perform active learning. For successfully achieving this, we provide a distance measure to evaluate the similarity between pairs of linear subspaces with different dimensions, and also show that this distance measure is a metric. The usability of the proposed subspace-distance-enabled active learning (SDE-AL) framework is demonstrated by augmenting two existing non-intrusive reduced-order modeling approaches, and providing their active-learning-driven (ActLearn) extensions, namely, SDE-ActLearn-POD-KSNN, and SDE-ActLearn-POD-NN. Furthermore, we report positive results for two parametric physical models, highlighting the efficiency of the proposed SDE-AL approach.

Recent advances in techniques for monitoring and perturbing neural populations have greatly enhanced our ability to study circuits in the brain. In particular, two-photon holographic optogenetics now enables precise photostimulation of experimenter-specified groups of individual neurons, while simultaneous two-photon calcium imaging enables the measurement of ongoing and induced activity across the neural population. Despite the enormous space of potential photostimulation patterns and the time-consuming nature of photostimulation experiments, very little algorithmic work has been done to determine the most effective photostimulation patterns for identifying the neural population dynamics. Here, we develop methods to efficiently select which neurons to stimulate such that the resulting neural responses will best inform a dynamical model of the neural population activity. Using neural population responses to photostimulation in mouse motor cortex, we demonstrate the efficacy of a low-rank linear dynamical systems model, and develop an active learning procedure which takes advantage of low-rank structure to determine informative photostimulation patterns.

Annotating medical images, particularly for organ segmentation, is laborious and time-consuming. For example, annotating an abdominal organ requires an estimated rate of 30-60 minutes per CT volume based on the expertise of an annotator and the size, visibility, and complexity of the organ. Therefore, publicly available datasets for multi-organ segmentation are often limited in data size and organ diversity. This paper proposes an active learning method to expedite the annotation process for organ segmentation and creates the largest multi-organ dataset (by far) with the spleen, liver, kidneys, stomach, gallbladder, pancreas, aorta, and IVC annotated in 8,448 CT volumes, equating to 3.2 million slices. The conventional annotation methods would take an experienced annotator up to 1,600 weeks (or roughly 30.8 years) to complete this task. In contrast, our annotation method has accomplished this task in three weeks (based on an 8-hour workday, five days a week) while maintaining a similar or even better annotation quality. This achievement is attributed to three unique properties of our method: (1) label bias reduction using multiple pre-trained segmentation models, (2) effective error detection in the model predictions, and (3) attention guidance for annotators to make corrections on the most salient errors. Furthermore, we summarize the taxonomy of common errors made by AI algorithms and annotators. This allows for continuous revision of both AI and annotations and significantly reduces the annotation costs required to create large-scale datasets for a wider variety of medical imaging tasks.

When repeated evaluations for varying parameter configurations of a high-fidelity physical model are required, surrogate modeling techniques based on model order reduction are desired. In absence of the governing equations describing the dynamics, we need to construct the parametric reduced-order surrogate model in a non-intrusive fashion. In this setting, the usual residual-based error estimate for optimal parameter sampling associated with the reduced basis method is not directly available. Our work provides a non-intrusive optimality criterion to efficiently populate the parameter snapshots, thereby, enabling us to effectively construct a parametric surrogate model. We consider separate parameter-specific proper orthogonal decomposition (POD) subspaces and propose an active-learning-driven surrogate model using kernel-based shallow neural networks, abbreviated as ActLearn-POD-KSNN surrogate model. To demonstrate the validity of our proposed ideas, we present numerical experiments using two physical models, namely Burgers' equation and shallow water equations. Both the models have mixed -- convective and diffusive -- effects within their respective parameter domains, with each of them dominating in certain regions. The proposed ActLearn-POD-KSNN surrogate model efficiently predicts the solution at new parameter locations, even for a setting with multiple interacting shock profiles.

Given a labeled training set and a collection of unlabeled data, the goal of active learning (AL) is to identify the best unlabeled points to label. In this comprehensive study, we analyze the performance of a variety of AL algorithms on deep neural networks trained on 69 real-world tabular classification datasets from the OpenML-CC18 benchmark. We consider different data regimes and the effect of self-supervised model pre-training. Surprisingly, we find that the classical margin sampling technique matches or outperforms all others, including current state-ofart, in a wide range of experimental settings. To researchers, we hope to encourage rigorous benchmarking against margin, and to practitioners facing tabular data labeling constraints that hyper-parameter-free margin may often be all they need. Active learning (AL), the problem of identifying examples to label, is an important problem in machine learning since obtaining labels for data is oftentimes a costly manual process.

We are in the age of data. In recent years, many companies have already started collecting large amounts of data about their business. On the other hand, many companies are just starting now. If you are working in one of these companies, you might be wondering what can be done with all that data. What about using the data to train a supervised machine learning (ML) algorithm? The ML algorithm could perform the same classification task a human would, just so much faster!

Humans do not acquire perceptual abilities in the way we train machines. While machine learning algorithms typically operate on large collections of randomly-chosen, explicitly-labeled examples, human acquisition relies more heavily on multimodal unsupervised learning (as infants) and active learning (as children). With this motivation, we present a learning framework for sound representation and recognition that combines (i) a self-supervised objective based on a general notion of unimodal and cross-modal coincidence, (ii) a clustering objective that reflects our need to impose categorical structure on our experiences, and (iii) a cluster-based active learning procedure that solicits targeted weak supervision to consolidate categories into relevant semantic classes. By training a combined sound embedding/clustering/classification network according to these criteria, we achieve a new state-of-the-art unsupervised audio representation and demonstrate up to a 20-fold reduction in the number of labels required to reach a desired classification performance.