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Mathematics of Computing
GenDP: A Framework of Dynamic Programming Acceleration for Genome Sequencing Analysis
Genomics is playing an important role in transforming healthcare. Genetic data, however, is being produced at a rate that far outpaces Moore's Law. Many efforts have been made to accelerate genomics kernels on modern commodity hardware, such as CPUs and GPUs, as well as custom accelerators (ASICs) for specific genomics kernels. While ASICs provide higher performance and energy efficiency than general-purpose hardware, they incur a high hardware-design cost. Moreover, to extract the best performance, ASICs tend to have significantly different architectures for different kernels.
High Probability Complexity Bounds of Trust-Region Stochastic Sequential Quadratic Programming with Heavy-Tailed Noise
Fang, Yuchen, Lavaei, Javad, Na, Sen
In this paper, we consider nonlinear optimization problems with a stochastic objective and deterministic equality constraints. We propose a Trust-Region Stochastic Sequential Quadratic Programming (TR-SSQP) method and establish its high-probability iteration complexity bounds for identifying first- and second-order $\epsilon$-stationary points. In our algorithm, we assume that exact objective values, gradients, and Hessians are not directly accessible but can be estimated via zeroth-, first-, and second-order probabilistic oracles. Compared to existing complexity studies of SSQP methods that rely on a zeroth-order oracle with sub-exponential tail noise (i.e., light-tailed) and focus mostly on first-order stationarity, our analysis accommodates irreducible and heavy-tailed noise in the zeroth-order oracle and significantly extends the analysis to second-order stationarity. We show that under heavy-tailed noise conditions, our SSQP method achieves the same high-probability first-order iteration complexity bounds as in the light-tailed noise setting, while further exhibiting promising second-order iteration complexity bounds. Specifically, the method identifies a first-order $\epsilon$-stationary point in $\mathcal{O}(\epsilon^{-2})$ iterations and a second-order $\epsilon$-stationary point in $\mathcal{O}(\epsilon^{-3})$ iterations with high probability, provided that $\epsilon$ is lower bounded by a constant determined by the irreducible noise level in estimation. We validate our theoretical findings and evaluate the practical performance of our method on CUTEst benchmark test set.
Operator Learning: A Statistical Perspective
Operator learning has emerged as a powerful tool in scientific computing for approximating mappings between infinite-dimensional function spaces. A primary application of operator learning is the development of surrogate models for the solution operators of partial differential equations (PDEs). These methods can also be used to develop black-box simulators to model system behavior from experimental data, even without a known mathematical model. In this article, we begin by formalizing operator learning as a function-to-function regression problem and review some recent developments in the field. We also discuss PDE-specific operator learning, outlining strategies for incorporating physical and mathematical constraints into architecture design and training processes. Finally, we end by highlighting key future directions such as active data collection and the development of rigorous uncertainty quantification frameworks.
Learning the Infinitesimal Generator of Stochastic Diffusion Processes
We address data-driven learning of the infinitesimal generator of stochastic diffusion processes, essential for understanding numerical simulations of natural and physical systems. The unbounded nature of the generator poses significant challenges, rendering conventional analysis techniques for Hilbert-Schmidt operators ineffective. To overcome this, we introduce a novel framework based on the energy functional for these stochastic processes.
On the Interplay between Social Welfare and Tractability of Equilibria
Nevertheless, we show that when (approximate) full efficiency can be guaranteed via a smoothness argument à la Roughgarden, Nash equilibria are approachable under a family of no-regret learning algorithms, thereby enabling fast and decentralized computation. We leverage this connection to obtain new convergence results in large games--wherein the number of players n 1--under the well-documented property of full efficiency via smoothness in the limit. Surprisingly, our framework unifies equilibrium computation in disparate classes of problems including games with vanishing strategic sensitivity and two-player zero-sum games, illuminating en route an immediate but overlooked equivalence between smoothness and a well-studied condition in the optimization literature known as the Minty property. Finally, we establish that a family of no-regret dynamics attains a welfare bound that improves over the smoothness framework while at the same time guaranteeing convergence to the set of coarse correlated equilibria. We show this by employing the clairvoyant mirror descent algortihm recently introduced by Piliouras et al.
Probabilistic Exponential Integrators
Probabilistic solvers provide a flexible and efficient framework for simulation, uncertainty quantification, and inference in dynamical systems. However, like standard solvers, they suffer performance penalties for certain stiff systems, where small steps are required not for reasons of numerical accuracy but for the sake of stability. This issue is greatly alleviated in semi-linear problems by the probabilistic exponential integrators developed in this paper. By including the fast, linear dynamics in the prior, we arrive at a class of probabilistic integrators with favorable properties. Namely, they are proven to be L-stable, and in a certain case reduce to a classic exponential integrator--with the added benefit of providing a probabilistic account of the numerical error. The method is also generalized to arbitrary non-linear systems by imposing piece-wise semi-linearity on the prior via Jacobians of the vector field at the previous estimates, resulting in probabilistic exponential Rosenbrock methods. We evaluate the proposed methods on multiple stiff differential equations and demonstrate their improved stability and efficiency over established probabilistic solvers. The present contribution thus expands the range of problems that can be effectively tackled within probabilistic numerics.
f2e84d98d6dc0c7acd56b40509355666-AuthorFeedback.pdf
We thank the reviewers for their positive feedback and valuable suggestions. NE and we hope that our work is a first step in that direction. Computation of equilibria: We have indeed not looked into the problem of computing a NE in our game. Existence of pure-strategy equilibria: In the numerical example of Section 5 in one dimension (see Appendix C.1 for NE for large n (though we did not prove it). Assumption (A4): As the reviewers pointed out, we agree that this is in fact a strong assumption.