How much information does a neural population convey about a stimulus? Answers to this question are known to strongly depend on the correlation of response variability in neural populations. These noise correlations, however, are essentially immeasurable as the number of parameters in a noise correlation matrix grows quadratically with population size. Here, we suggest to bypass this problem by imposing a parametric model on a noise correlation matrix. Our basic assumption is that noise correlations arise due to common inputs between neurons. On average, noise correlations will therefore reflect signal correlations, which can be measured in neural populations. We suggest an explicit parametric dependency between signal and noise correlations. We show how this dependency can be used to fill the gaps" in noise correlations matrices using an iterative application of the Wishart distribution over positive definitive matrices. We apply our method to data from the primary somatosensory cortex of monkeys performing a two-alternative-forced choice task. We compare the discrimination thresholds read out from the population of recorded neurons with the discrimination threshold of the monkey and show that our method predicts different results than simpler, average schemes of noise correlations."

In a recent paper Joachims (2006) presented SVM-Perf, a cutting plane method (CPM) for training linear Support Vector Machines (SVMs) which converges to an $\epsilon$ accurate solution in $O(1/\epsilon^{2})$ iterations. By tightening the analysis, Teo et al. (2010) showed that $O(1/\epsilon)$ iterations suffice. Given the impressive convergence speed of CPM on a number of practical problems, it was conjectured that these rates could be further improved. In this paper we disprove this conjecture. We present counter examples which are not only applicable for training linear SVMs with hinge loss, but also hold for support vector methods which optimize a \emph{multivariate} performance score. However, surprisingly, these problems are not inherently hard. By exploiting the structure of the objective function we can devise an algorithm that converges in $O(1/\sqrt{\epsilon})$ iterations.

We study the problem of learning a sparse linear regression vector under additional conditions on the structure of its sparsity pattern. We present a family of convex penalty functions, which encode this prior knowledge by means of a set of constraints on the absolute values of the regression coefficients. This family subsumes the $\ell_1$ norm and is flexible enough to include different models of sparsity patterns, which are of practical and theoretical importance. We establish some important properties of these functions and discuss some examples where they can be computed explicitly. Moreover, we present a convergent optimization algorithm for solving regularized least squares with these penalty functions. Numerical simulations highlight the benefit of structured sparsity and the advantage offered by our approach over the Lasso and other related methods.

We discuss an online learning framework in which the agent is allowed to say ``I don't know'' as well as making incorrect predictions on given examples. We analyze the trade off between saying ``I don't know'' and making mistakes. If the number of don't know predictions is forced to be zero, the model reduces to the well-known mistake-bound model introduced by Littlestone [Lit88]. On the other hand, if no mistakes are allowed, the model reduces to KWIK framework introduced by Li et. al. [LLW08]. We propose a general, though inefficient, algorithm for general finite concept classes that minimizes the number of don't-know predictions if a certain number of mistakes are allowed. We then present specific polynomial-time algorithms for the concept classes of monotone disjunctions and linear separators.

The problem of learning to predict structured labels is of key importance in many applications. However, for general graph structure both learning and inference in this setting are intractable. Here we show that it is possible to circumvent this difficulty when the input distribution is rich enough via a method similar in spirit to pseudo-likelihood. We show how our new method achieves consistency, and illustrate empirically that it indeed performs as well as exact methods when sufficiently large training sets are used.

Experts (human or computer) are often required to assess the probability of uncertain events. When a collection of experts independently assess events that are structurally interrelated, the resulting assessment may violate fundamental laws of probability. Such an assessment is termed incoherent. In this work we investigate how the problem of incoherence may be affected by allowing experts to specify likelihood models and then update their assessments based on the realization of a globally-observable random sequence.

This paper explores links between basis construction methods in Markov decision processes and power series expansions of value functions. This perspective provides a useful framework to analyze properties of existing bases, as well as provides insight into constructing more effective bases. Krylov and Bellman error bases are based on the Neumann series expansion. These bases incur very large initial Bellman errors, and can converge rather slowly as the discount factor approaches unity. The Laurent series expansion, which relates discounted and average-reward formulations, provides both an explanation for this slow convergence as well as suggests a way to construct more efficient basis representations. The first two terms in the Laurent series represent the scaled average-reward and the average-adjusted sum of rewards, and subsequent terms expand the discounted value function using powers of a generalized inverse called the Drazin (or group inverse) of a singular matrix derived from the transition matrix. Experiments show that Drazin bases converge considerably more quickly than several other bases, particularly for large values of the discount factor. An incremental variant of Drazin bases called Bellman average-reward bases (BARBs) is described, which provides some of the same benefits at lower computational cost.

A striking aspect of cortical neural networks is the divergence of a relatively small number of input channels from the peripheral sensory apparatus into a large number of cortical neurons, an over-complete representation strategy. Cortical neurons are then connected by a sparse network of lateral synapses. Here we propose that such architecture may increase the persistence of the representation of an incoming stimulus, or a percept. We demonstrate that for a family of networks in which the receptive field of each neuron is re-expressed by its outgoing connections, a represented percept can remain constant despite changing activity. We term this choice of connectivity REceptive FIeld REcombination (REFIRE) networks. The sparse REFIRE network may serve as a high-dimensional integrator and a biologically plausible model of the local cortical circuit.

We pose transductive classification as a matrix completion problem. By assuming the underlying matrix has a low rank, our formulation is able to handle three problems simultaneously: i) multi-label learning, where each item has more than one label, ii) transduction, where most of these labels are unspecified, and iii) missing data, where a large number of features are missing. We obtained satisfactory results on several real-world tasks, suggesting that the low rank assumption may not be as restrictive as it seems. Our method allows for different loss functions to apply on the feature and label entries of the matrix. The resulting nuclear norm minimization problem is solved with a modified fixed-point continuation method that is guaranteed to find the global optimum.

We present a generative probabilistic model for learning general graph structures, which we term concept graphs, from text. Concept graphs provide a visual summary of the thematic content of a collection of documents-a task that is difficult to accomplish using only keyword search. The proposed model can learn different types of concept graph structures and is capable of utilizing partial prior knowledge about graph structure as well as labeled documents. We describe a generative model that is based on a stick-breaking process for graphs, and a Markov Chain Monte Carlo inference procedure. Experiments on simulated data show that the model can recover known graph structure when learning in both unsupervised and semi-supervised modes. We also show that the proposed model is competitive in terms of empirical log likelihood with existing structure-based topic models (such as hPAM and hLDA) on real-world text data sets. Finally, we illustrate the application of the model to the problem of updating Wikipedia category graphs.