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Parallel ACO with a Ring Neighborhood for Dynamic TSP
Pintea, Camelia-M., Crisan, Gloria Cerasela, Manea, Mihai
The current paper introduces a new parallel computing technique based on ant colony optimization for a dynamic routing problem. In the dynamic traveling salesman problem the distances between cities as travel times are no longer fixed. The new technique uses a parallel model for a problem variant that allows a slight movement of nodes within their Neighborhoods. The algorithm is tested with success on several large data sets.
Gaussian process modelling of multiple short time series
We present techniques for effective Gaussian process (GP) modelling of multiple short time series. These problems are common when applying GP models independently to each gene in a gene expression time series data set. Such sets typically contain very few time points. Naive application of common GP modelling techniques can lead to severe over-fitting or under-fitting in a significant fraction of the fitted models, depending on the details of the data set. We propose avoiding over-fitting by constraining the GP length-scale to values that focus most of the energy spectrum to frequencies below the Nyquist frequency corresponding to the sampling frequency in the data set. Under-fitting can be avoided by more informative priors on observation noise. Combining these methods allows applying GP methods reliably automatically to large numbers of independent instances of short time series. This is illustrated with experiments with both synthetic data and real gene expression data.
Rank/Norm Regularization with Closed-Form Solutions: Application to Subspace Clustering
Yu, Yao-Liang, Schuurmans, Dale
When data is sampled from an unknown subspace, principal component analysis (PCA) provides an effective way to estimate the subspace and hence reduce the dimension of the data. At the heart of PCA is the Eckart-Young-Mirsky theorem, which characterizes the best rank k approximation of a matrix. In this paper, we prove a generalization of the Eckart-Young-Mirsky theorem under all unitarily invariant norms. Using this result, we obtain closed-form solutions for a set of rank/norm regularized problems, and derive closed-form solutions for a general class of subspace clustering problems (where data is modelled by unions of unknown subspaces). From these results we obtain new theoretical insights and promising experimental results.
Counting in Graph Covers: A Combinatorial Characterization of the Bethe Entropy Function
We present a combinatorial characterization of the Bethe entropy function of a factor graph, such a characterization being in contrast to the original, analytical, definition of this function. We achieve this combinatorial characterization by counting valid configurations in finite graph covers of the factor graph. Analogously, we give a combinatorial characterization of the Bethe partition function, whose original definition was also of an analytical nature. As we point out, our approach has similarities to the replica method, but also stark differences. The above findings are a natural backdrop for introducing a decoder for graph-based codes that we will call symbolwise graph-cover decoding, a decoder that extends our earlier work on blockwise graph-cover decoding. Both graph-cover decoders are theoretical tools that help towards a better understanding of message-passing iterative decoding, namely blockwise graph-cover decoding links max-product (min-sum) algorithm decoding with linear programming decoding, and symbolwise graph-cover decoding links sum-product algorithm decoding with Bethe free energy function minimization at temperature one. In contrast to the Gibbs entropy function, which is a concave function, the Bethe entropy function is in general not concave everywhere. In particular, we show that every code picked from an ensemble of regular low-density parity-check codes with minimum Hamming distance growing (with high probability) linearly with the block length has a Bethe entropy function that is convex in certain regions of its domain.
Multi-view constrained clustering with an incomplete mapping between views
Eaton, Eric, desJardins, Marie, Jacob, Sara
Multi-view learning algorithms typically assume a complete bipartite mapping between the different views in order to exchange information during the learning process. However, many applications provide only a partial mapping between the views, creating a challenge for current methods. To address this problem, we propose a multi-view algorithm based on constrained clustering that can operate with an incomplete mapping. Given a set of pairwise constraints in each view, our approach propagates these constraints using a local similarity measure to those instances that can be mapped to the other views, allowing the propagated constraints to be transferred across views via the partial mapping. It uses co-EM to iteratively estimate the propagation within each view based on the current clustering model, transfer the constraints across views, and then update the clustering model. By alternating the learning process between views, this approach produces a unified clustering model that is consistent with all views. We show that this approach significantly improves clustering performance over several other methods for transferring constraints and allows multi-view clustering to be reliably applied when given a limited mapping between the views. Our evaluation reveals that the propagated constraints have high precision with respect to the true clusters in the data, explaining their benefit to clustering performance in both single- and multi-view learning scenarios.
A General Methodology for the Determination of 2D Bodies Elastic Deformation Invariants. Application to the Automatic Identification of Parasites
Arabadjis, Dimitris, Rousopoulos, Panayiotis, Papaodysseus, Constantin, Panagopoulos, Michalis, Loumou, Panayiota, Theodoropoulos, Georgios
A novel methodology is introduced here that exploits 2D images of arbitrary elastic body deformation instances, so as to quantify mechano-elastic characteristics that are deformation invariant. Determination of such characteristics allows for developing methods offering an image of the undeformed body. General assumptions about the mechano-elastic properties of the bodies are stated, which lead to two different approaches for obtaining bodies' deformation invariants. One was developed to spot deformed body's neutral line and its cross sections, while the other solves deformation PDEs by performing a set of equivalent image operations on the deformed body images. Both these processes may furnish a body undeformed version from its deformed image. This was confirmed by obtaining the undeformed shape of deformed parasites, cells (protozoa), fibers and human lips. In addition, the method has been applied to the important problem of parasite automatic classification from their microscopic images. To achieve this, we first apply the previous method to straighten the highly deformed parasites and then we apply a dedicated curve classification method to the straightened parasite contours. It is demonstrated that essentially different deformations of the same parasite give rise to practically the same undeformed shape, thus confirming the consistency of the introduced methodology. Finally, the developed pattern recognition method classifies the unwrapped parasites into 6 families, with an accuracy rate of 97.6 %.
Optimization in Differentiable Manifolds in Order to Determine the Method of Construction of Prehistoric Wall-Paintings
Arabadjis, Dimitris, Rousopoulos, Panayiotis, Papaodysseus, Constantin, Exarhos, Michalis, Panagopoulos, Michalis, Papazoglou-Manioudaki, Lena
In this paper a general methodology is introduced for the determination of potential prototype curves used for the drawing of prehistoric wall-paintings. The approach includes a) preprocessing of the wall-paintings contours to properly partition them, according to their curvature, b) choice of prototype curves families, c) analysis and optimization in 4-manifold for a first estimation of the form of these prototypes, d) clustering of the contour parts and the prototypes, to determine a minimal number of potential guides, e) further optimization in 4-manifold, applied to each cluster separately, in order to determine the exact functional form of the potential guides, together with the corresponding drawn contour parts. The introduced methodology simultaneously deals with two problems: a) the arbitrariness in data-points orientation and b) the determination of one proper form for a prototype curve that optimally fits the corresponding contour data. Arbitrariness in orientation has been dealt with a novel curvature based error, while the proper forms of curve prototypes have been exhaustively determined by embedding curvature deformations of the prototypes into 4-manifolds. Application of this methodology to celebrated wall-paintings excavated at Tyrins, Greece and the Greek island of Thera, manifests it is highly probable that these wall-paintings had been drawn by means of geometric guides that correspond to linear spirals and hyperbolae. These geometric forms fit the drawings' lines with an exceptionally low average error, less than 0.39mm. Hence, the approach suggests the existence of accurate realizations of complicated geometric entities, more than 1000 years before their axiomatic formulation in Classical Ages.
Modeling Weather Conditions Consequences on Road Trafficking Behaviors
Allain, Guillaume, Gamboa, Fabrice, Goudal, Philippe, Kien, Jean-Noรซl, Loubes, Jean-Michel
We provide a model to understand how adverse weather conditions modify traffic flow dynamic. We first prove that the microscopic Free Flow Speed of the vehicles is changed and then provide a rule to model this change. For this, we consider a thresholded linear model, corresponding to an application of a MARS model to road trafficking. This model adapts itself locally to the whole road network and provides accurate unbiased forecasted speed using live or short term forecasted weather data information.
A Fast Distributed Proximal-Gradient Method
Chen, Annie I., Ozdaglar, Asuman
We present a distributed proximal-gradient method for optimizing the average of convex functions, each of which is the private local objective of an agent in a network with time-varying topology. The local objectives have distinct differentiable components, but they share a common nondifferentiable component, which has a favorable structure suitable for effective computation of the proximal operator. In our method, each agent iteratively updates its estimate of the global minimum by optimizing its local objective function, and exchanging estimates with others via communication in the network. Using Nesterov-type acceleration techniques and multiple communication steps per iteration, we show that this method converges at the rate 1/k (where k is the number of communication rounds between the agents), which is faster than the convergence rate of the existing distributed methods for solving this problem. The superior convergence rate of our method is also verified by numerical experiments.
Level Set Estimation from Compressive Measurements using Box Constrained Total Variation Regularization
Estimating the level set of a signal from measurements is a task that arises in a variety of fields, including medical imaging, astronomy, and digital elevation mapping. Motivated by scenarios where accurate and complete measurements of the signal may not available, we examine here a simple procedure for estimating the level set of a signal from highly incomplete measurements, which may additionally be corrupted by additive noise. The proposed procedure is based on box-constrained Total Variation (TV) regularization. We demonstrate the performance of our approach, relative to existing state-of-the-art techniques for level set estimation from compressive measurements, via several simulation examples.