Yepes, Antonio Jimeno
Financial Report Chunking for Effective Retrieval Augmented Generation
Yepes, Antonio Jimeno, You, Yao, Milczek, Jan, Laverde, Sebastian, Li, Renyu
Chunking information is a key step in Retrieval Augmented Generation (RAG). Current research primarily centers on paragraph-level chunking. This approach treats all texts as equal and neglects the information contained in the structure of documents. We propose an expanded approach to chunk documents by moving beyond mere paragraph-level chunking to chunk primary by structural element components of documents. Dissecting documents into these constituent elements creates a new way to chunk documents that yields the best chunk size without tuning. We introduce a novel framework that evaluates how chunking based on element types annotated by document understanding models contributes to the overall context and accuracy of the information retrieved. We also demonstrate how this approach impacts RAG assisted Question & Answer task performance. Our research includes a comprehensive analysis of various element types, their role in effective information retrieval, and the impact they have on the quality of RAG outputs. Findings support that element type based chunking largely improve RAG results on financial reporting. Through this research, we are also able to answer how to uncover highly accurate RAG.
Hypergraph Convolutional Networks for Fine-grained ICU Patient Similarity Analysis and Risk Prediction
Liu, Yuxi, Zhang, Zhenhao, Qin, Shaowen, Salim, Flora D., Yepes, Antonio Jimeno, Shen, Jun, Bian, Jiang
The Intensive Care Unit (ICU) is one of the most important parts of a hospital, which admits critically ill patients and provides continuous monitoring and treatment. Various patient outcome prediction methods have been attempted to assist healthcare professionals in clinical decision-making. Existing methods focus on measuring the similarity between patients using deep neural networks to capture the hidden feature structures. However, the higher-order relationships are ignored, such as patient characteristics (e.g., diagnosis codes) and their causal effects on downstream clinical predictions. In this paper, we propose a novel Hypergraph Convolutional Network that allows the representation of non-pairwise relationships among diagnosis codes in a hypergraph to capture the hidden feature structures so that fine-grained patient similarity can be calculated for personalized mortality risk prediction. Evaluation using a publicly available eICU Collaborative Research Database indicates that our method achieves superior performance over the state-of-the-art models on mortality risk prediction. Moreover, the results of several case studies demonstrated the effectiveness and robustness of the model decisions.
Contrastive Learning-based Imputation-Prediction Networks for In-hospital Mortality Risk Modeling using EHRs
Liu, Yuxi, Zhang, Zhenhao, Qin, Shaowen, Salim, Flora D., Yepes, Antonio Jimeno
Predicting the risk of in-hospital mortality from electronic health records (EHRs) has received considerable attention. Such predictions will provide early warning of a patient's health condition to healthcare professionals so that timely interventions can be taken. This prediction task is challenging since EHR data are intrinsically irregular, with not only many missing values but also varying time intervals between medical records. Existing approaches focus on exploiting the variable correlations in patient medical records to impute missing values and establishing time-decay mechanisms to deal with such irregularity. This paper presents a novel contrastive learning-based imputation-prediction network for predicting in-hospital mortality risks using EHR data. Our approach introduces graph analysis-based patient stratification modeling in the imputation process to group similar patients. This allows information of similar patients only to be used, in addition to personal contextual information, for missing value imputation. Moreover, our approach can integrate contrastive learning into the proposed network architecture to enhance patient representation learning and predictive performance on the classification task. Experiments on two real-world EHR datasets show that our approach outperforms the state-of-the-art approaches in both imputation and prediction tasks.
Hyperplane bounds for neural feature mappings
Yepes, Antonio Jimeno
When minimising the empirical risk, the generalisation of the learnt function still depends on the performance on the training data, the Vapnik-Chervonenkis(VC)- dimension of the function and the number of training examples. Neural networks have a large number of parameters, which correlates with their VC-dimension that is typically large but not infinite, and typically a large number of training instances are needed to effectively train them. In this work, we explore how to optimize feature mappings using neural network with the intention to reduce the effective VC-dimension of the hyperplane found in the space generatedby the mapping. An interpretationofthe resultsofthis study isthat it ispossible to define a loss that controls the VC-dimension of the separating hyperplane. We evaluate this approach and observe that the performance when using this method improves when the size of the training set is small.
Grey-box Adversarial Attack And Defence For Sentiment Classification
Xu, Ying, Zhong, Xu, Yepes, Antonio Jimeno, Lau, Jey Han
We introduce a grey-box adversarial attack and defence framework for sentiment classification. We address the issues of differentiability, label preservation and input reconstruction for adversarial attack and defence in one unified framework. Our results show that once trained, the attacking model is capable of generating high-quality adversarial examples substantially faster (one order of magnitude less in time) than state-of-the-art attacking methods. These examples also preserve the original sentiment according to human evaluation. Additionally, our framework produces an improved classifier that is robust in defending against multiple adversarial attacking methods. Code is available at: https://github.com/ibm-aur-nlp/adv-def-text-dist.
Understanding in Artificial Intelligence
Maetschke, Stefan, Iraola, David Martinez, Barnard, Pieter, ShafieiBavani, Elaheh, Zhong, Peter, Xu, Ying, Yepes, Antonio Jimeno
However, this progress is largely driven by increased computational power, namely GPU's, and bigger data sets but not due to radically new algorithms or knowledge representations. Artificial Neural Networks and Stochastic Gradient Descent, popularized in the 80's [3], remain the fundamental building blocks for most modern AI systems. While very successful for many applications, especially in vision, the purely deep-learning based approach has significant weaknesses. For instance, CNN's struggle with same-different relations [4], fail when long-chained reasoning is needed [5], are non-decomposable, cannot easily incorporate symbolic knowledge, and are hampered by a lack of model interpretability. Many current methods essentially compute higher order statistics over basic elements such as pixels, phonemes, letters or words to process inputs but do not explicitly model the building blocks and their relations in a (de)composable and interpretable way.
Integration of UMLS and MEDLINE in Unsupervised Word Sense Disambiguation
Yepes, Antonio Jimeno (National Library of Medicine) | Aronson, Alan R. (National Library of Medicine)
Scarcity of training data for word sense disambiguation argues for the use of knowledge-based disambiguation methods, which rely on information available in terminological resources. Unfortunately, these resources are not generally optimized to perform word sense disambiguation. On the other hand, there are many examples of ambiguous biomedical words with context in MEDLINE. However, these examples of ambiguity are not labeled with their proper sense. We propose the integration of the UMLS and MEDLINE to create concept profiles which are used to perform knowledge-based word sense disambiguation. Our results show an accuracy of 0.8770 on a biomedical word sense disambiguation data set; this represents a statistically significant improvement over other knowledge-based methods based on the UMLS on this data set.