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Collaborating Authors

 Xu, Xiaojian


Segment as You Wish -- Free-Form Language-Based Segmentation for Medical Images

arXiv.org Artificial Intelligence

Medical imaging is crucial for diagnosing a patient's health condition, and accurate segmentation of these images is essential for isolating regions of interest to ensure precise diagnosis and treatment planning. Existing methods primarily rely on bounding boxes or point-based prompts, while few have explored text-related prompts, despite clinicians often describing their observations and instructions in natural language. To address this gap, we first propose a RAG-based free-form text prompt generator, that leverages the domain corpus to generate diverse and realistic descriptions. Then, we introduce FLanS, a novel medical image segmentation model that handles various free-form text prompts, including professional anatomy-informed queries, anatomy-agnostic position-driven queries, and anatomy-agnostic size-driven queries. Additionally, our model also incorporates a symmetry-aware canonicalization module to ensure consistent, accurate segmentations across varying scan orientations and reduce confusion between the anatomical position of an organ and its appearance in the scan. FLanS is trained on a large-scale dataset of over 100k medical images from 7 public datasets. Comprehensive experiments demonstrate the model's superior language understanding and segmentation precision, along with a deep comprehension of the relationship between them, outperforming SOTA baselines on both in-domain and out-of-domain datasets.


Learning Image Priors through Patch-based Diffusion Models for Solving Inverse Problems

arXiv.org Artificial Intelligence

Diffusion models can learn strong image priors from underlying data distribution and use them to solve inverse problems, but the training process is computationally expensive and requires lots of data. Such bottlenecks prevent most existing works from being feasible for high-dimensional and high-resolution data such as 3D images. This paper proposes a method to learn an efficient data prior for the entire image by training diffusion models only on patches of images. Specifically, we propose a patch-based position-aware diffusion inverse solver, called PaDIS, where we obtain the score function of the whole image through scores of patches and their positional encoding and utilize this as the prior for solving inverse problems. First of all, we show that this diffusion model achieves an improved memory efficiency and data efficiency while still maintaining the capability to generate entire images via positional encoding. Additionally, the proposed PaDIS model is highly flexible and can be plugged in with different diffusion inverse solvers (DIS). We demonstrate that the proposed PaDIS approach enables solving various inverse problems in both natural and medical image domains, including CT reconstruction, deblurring, and superresolution, given only patch-based priors. Notably, PaDIS outperforms previous DIS methods trained on entire image priors in the case of limited training data, demonstrating the data efficiency of our proposed approach by learning patch-based prior.


Poisson-Gaussian Holographic Phase Retrieval with Score-based Image Prior

arXiv.org Artificial Intelligence

Phase retrieval (PR) is a crucial problem in many imaging applications. This study focuses on resolving the holographic phase retrieval problem in situations where the measurements are affected by a combination of Poisson and Gaussian noise, which commonly occurs in optical imaging systems. To address this problem, we propose a new algorithm called "AWFS" that uses the accelerated Wirtinger flow (AWF) with a score function as generative prior. Specifically, we formulate the PR problem as an optimization problem that incorporates both data fidelity and regularization terms. We calculate the gradient of the log-likelihood function for PR and determine its corresponding Lipschitz constant. Additionally, we introduce a generative prior in our regularization framework by using score matching to capture information about the gradient of image prior distributions. We provide theoretical analysis that establishes a critical-point convergence guarantee for the proposed algorithm. The results of our simulation experiments on three different datasets show the following: 1) By using the PG likelihood model, the proposed algorithm improves reconstruction compared to algorithms based solely on Gaussian or Poisson likelihood. 2) The proposed score-based image prior method, performs better than the method based on denoising diffusion probabilistic model (DDPM), as well as plug-and-play alternating direction method of multipliers (PnP-ADMM) and regularization by denoising (RED).


signProx: One-Bit Proximal Algorithm for Nonconvex Stochastic Optimization

arXiv.org Machine Learning

Stochastic gradient descent (SGD) is one of the most widely used optimization methods for parallel and distributed processing of large datasets. One of the key limitations of distributed SGD is the need to regularly communicate the gradients between different computation nodes. To reduce this communication bottleneck, recent work has considered a one-bit variant of SGD, where only the sign of each gradient element is used in optimization. In this paper, we extend this idea by proposing a stochastic variant of the proximal-gradient method that also uses one-bit per update element. We prove the theoretical convergence of the method for non-convex optimization under a set of explicit assumptions. Our results indicate that the compressed method can match the convergence rate of the uncompressed one, making the proposed method potentially appealing for distributed processing of large datasets.