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Collaborating Authors

 Wu, Jing


TabDeco: A Comprehensive Contrastive Framework for Decoupled Representations in Tabular Data

arXiv.org Artificial Intelligence

Representation learning is a fundamental aspect of modern artificial intelligence, driving substantial improvements across diverse applications. While selfsupervised contrastive learning has led to significant advancements in fields like computer vision and natural language processing, its adaptation to tabular data presents unique challenges. Traditional approaches often prioritize optimizing model architecture and loss functions but may overlook the crucial task of constructing meaningful positive and negative sample pairs from various perspectives like feature interactions, instance-level patterns and batch-specific contexts. To address these challenges, we introduce TabDeco, a novel method that leverages attention-based encoding strategies across both rows and columns and employs contrastive learning framework to effectively disentangle feature representations at multiple levels, including features, instances and data batches.


CROPS: A Deployable Crop Management System Over All Possible State Availabilities

arXiv.org Artificial Intelligence

Exploring the optimal management strategy for nitrogen and irrigation has a significant impact on crop yield, economic profit, and the environment. To tackle this optimization challenge, this paper introduces a deployable \textbf{CR}op Management system \textbf{O}ver all \textbf{P}ossible \textbf{S}tate availabilities (CROPS). CROPS employs a language model (LM) as a reinforcement learning (RL) agent to explore optimal management strategies within the Decision Support System for Agrotechnology Transfer (DSSAT) crop simulations. A distinguishing feature of this system is that the states used for decision-making are partially observed through random masking. Consequently, the RL agent is tasked with two primary objectives: optimizing management policies and inferring masked states. This approach significantly enhances the RL agent's robustness and adaptability across various real-world agricultural scenarios. Extensive experiments on maize crops in Florida, USA, and Zaragoza, Spain, validate the effectiveness of CROPS. Not only did CROPS achieve State-of-the-Art (SOTA) results across various evaluation metrics such as production, profit, and sustainability, but the trained management policies are also immediately deployable in over of ten millions of real-world contexts. Furthermore, the pre-trained policies possess a noise resilience property, which enables them to minimize potential sensor biases, ensuring robustness and generalizability. Finally, unlike previous methods, the strength of CROPS lies in its unified and elegant structure, which eliminates the need for pre-defined states or multi-stage training. These advancements highlight the potential of CROPS in revolutionizing agricultural practices.


EMOCPD: Efficient Attention-based Models for Computational Protein Design Using Amino Acid Microenvironment

arXiv.org Artificial Intelligence

Computational protein design (CPD) refers to the use of computational methods to design proteins. Traditional methods relying on energy functions and heuristic algorithms for sequence design are inefficient and do not meet the demands of the big data era in biomolecules, with their accuracy limited by the energy functions and search algorithms. Existing deep learning methods are constrained by the learning capabilities of the networks, failing to extract effective information from sparse protein structures, which limits the accuracy of protein design. To address these shortcomings, we developed an Efficient attention-based Models for Computational Protein Design using amino acid microenvironment (EMOCPD). It aims to predict the category of each amino acid in a protein by analyzing the three-dimensional atomic environment surrounding the amino acids, and optimize the protein based on the predicted high-probability potential amino acid categories. EMOCPD employs a multi-head attention mechanism to focus on important features in the sparse protein microenvironment and utilizes an inverse residual structure to optimize the network architecture. The proposed EMOCPD achieves over 80% accuracy on the training set and 68.33% and 62.32% accuracy on two independent test sets, respectively, surpassing the best comparative methods by over 10%. In protein design, the thermal stability and protein expression of the predicted mutants from EMOCPD show significant improvements compared to the wild type, effectively validating EMOCPD's potential in designing superior proteins. Furthermore, the predictions of EMOCPD are influenced positively, negatively, or have minimal impact based on the content of the 20 amino acids, categorizing amino acids as positive, negative, or neutral. Research findings indicate that EMOCPD is more suitable for designing proteins with lower contents of negative amino acids.


Are We Ready for Planetary Exploration Robots? The TAIL-Plus Dataset for SLAM in Granular Environments

arXiv.org Artificial Intelligence

So far, planetary surface exploration depends on various mobile robot platforms. The autonomous navigation and decision-making of these mobile robots in complex terrains largely rely on their terrain-aware perception, localization and mapping capabilities. In this paper we release the TAIL-Plus dataset, a new challenging dataset in deformable granular environments for planetary exploration robots, which is an extension to our previous work, TAIL (Terrain-Aware multI-modaL) dataset. We conducted field experiments on beaches that are considered as planetary surface analog environments for diverse sandy terrains. In TAIL-Plus dataset, we provide more sequences with multiple loops and expand the scene from day to night. Benefit from our sensor suite with modular design, we use both wheeled and quadruped robots for data collection. The sensors include a 3D LiDAR, three downward RGB-D cameras, a pair of global-shutter color cameras that can be used as a forward-looking stereo camera, an RTK-GPS device and an extra IMU. Our datasets are intended to help researchers developing multi-sensor simultaneous localization and mapping (SLAM) algorithms for robots in unstructured, deformable granular terrains. Our datasets and supplementary materials will be available at \url{https://tailrobot.github.io/}.


Deep Representation Learning for Multi-functional Degradation Modeling of Community-dwelling Aging Population

arXiv.org Artificial Intelligence

As the aging population grows, particularly for the baby boomer generation, the United States is witnessing a significant increase in the elderly population experiencing multifunctional disabilities. These disabilities, stemming from a variety of chronic diseases, injuries, and impairments, present a complex challenge due to their multidimensional nature, encompassing both physical and cognitive aspects. Traditional methods often use univariate regression-based methods to model and predict single degradation conditions and assume population homogeneity, which is inadequate to address the complexity and diversity of aging-related degradation. This study introduces a novel framework for multi-functional degradation modeling that captures the multidimensional (e.g., physical and cognitive) and heterogeneous nature of elderly disabilities. Utilizing deep learning, our approach predicts health degradation scores and uncovers latent heterogeneity from elderly health histories, offering both efficient estimation and explainable insights into the diverse effects and causes of aging-related degradation. A real-case study demonstrates the effectiveness and marks a pivotal contribution to accurately modeling the intricate dynamics of elderly degradation, and addresses the healthcare challenges in the aging population.


Residual-based Language Models are Free Boosters for Biomedical Imaging

arXiv.org Artificial Intelligence

In this study, we uncover the unexpected efficacy of residual-based large language models (LLMs) as part of encoders for biomedical imaging tasks, a domain traditionally devoid of language or textual data. The approach diverges from established methodologies by utilizing a frozen transformer block, extracted from pre-trained LLMs, as an innovative encoder layer for the direct processing of visual tokens. This strategy represents a significant departure from the standard multi-modal vision-language frameworks, which typically hinge on language-driven prompts and inputs. We found that these LLMs could boost performance across a spectrum of biomedical imaging applications, including both 2D and 3D visual classification tasks, serving as plug-and-play boosters. More interestingly, as a byproduct, we found that the proposed framework achieved superior performance, setting new state-of-the-art results on extensive, standardized datasets in MedMNIST-2D and 3D. Through this work, we aim to open new avenues for employing LLMs in biomedical imaging and enriching the understanding of their potential in this specialized domain.


The New Agronomists: Language Models are Experts in Crop Management

arXiv.org Artificial Intelligence

Crop management plays a crucial role in determining crop yield, economic profitability, and environmental sustainability. Despite the availability of management guidelines, optimizing these practices remains a complex and multifaceted challenge. In response, previous studies have explored using reinforcement learning with crop simulators, typically employing simple neural-network-based reinforcement learning (RL) agents. Building on this foundation, this paper introduces a more advanced intelligent crop management system. This system uniquely combines RL, a language model (LM), and crop simulations facilitated by the Decision Support System for Agrotechnology Transfer (DSSAT). We utilize deep RL, specifically a deep Q-network, to train management policies that process numerous state variables from the simulator as observations. A novel aspect of our approach is the conversion of these state variables into more informative language, facilitating the language model's capacity to understand states and explore optimal management practices. The empirical results reveal that the LM exhibits superior learning capabilities. Through simulation experiments with maize crops in Florida (US) and Zaragoza (Spain), the LM not only achieves state-of-the-art performance under various evaluation metrics but also demonstrates a remarkable improvement of over 49\% in economic profit, coupled with reduced environmental impact when compared to baseline methods. Our code is available at \url{https://github.com/jingwu6/LM_AG}.


Towards a Robust Retrieval-Based Summarization System

arXiv.org Artificial Intelligence

This paper describes an investigation of the robustness of large language models (LLMs) for retrieval augmented generation (RAG)-based summarization tasks. While LLMs provide summarization capabilities, their performance in complex, real-world scenarios remains under-explored. Our first contribution is LogicSumm, an innovative evaluation framework incorporating realistic scenarios to assess LLM robustness during RAG-based summarization. Based on limitations identified by LogiSumm, we then developed SummRAG, a comprehensive system to create training dialogues and fine-tune a model to enhance robustness within LogicSumm's scenarios. SummRAG is an example of our goal of defining structured methods to test the capabilities of an LLM, rather than addressing issues in a one-off fashion. Experimental results confirm the power of SummRAG, showcasing improved logical coherence and summarization quality. Data, corresponding model weights, and Python code are available online.


TAIL: A Terrain-Aware Multi-Modal SLAM Dataset for Robot Locomotion in Deformable Granular Environments

arXiv.org Artificial Intelligence

Terrain-aware perception holds the potential to improve the robustness and accuracy of autonomous robot navigation in the wilds, thereby facilitating effective off-road traversals. However, the lack of multi-modal perception across various motion patterns hinders the solutions of Simultaneous Localization And Mapping (SLAM), especially when confronting non-geometric hazards in demanding landscapes. In this paper, we first propose a Terrain-Aware multI-modaL (TAIL) dataset tailored to deformable and sandy terrains. It incorporates various types of robotic proprioception and distinct ground interactions for the unique challenges and benchmark of multi-sensor fusion SLAM. The versatile sensor suite comprises stereo frame cameras, multiple ground-pointing RGB-D cameras, a rotating 3D LiDAR, an IMU, and an RTK device. This ensemble is hardware-synchronized, well-calibrated, and self-contained. Utilizing both wheeled and quadrupedal locomotion, we efficiently collect comprehensive sequences to capture rich unstructured scenarios. It spans the spectrum of scope, terrain interactions, scene changes, ground-level properties, and dynamic robot characteristics. We benchmark several state-of-the-art SLAM methods against ground truth and provide performance validations. Corresponding challenges and limitations are also reported. All associated resources are accessible upon request at \url{https://tailrobot.github.io/}.


Investigating White-Box Attacks for On-Device Models

arXiv.org Artificial Intelligence

Numerous mobile apps have leveraged deep learning capabilities. However, on-device models are vulnerable to attacks as they can be easily extracted from their corresponding mobile apps. Existing on-device attacking approaches only generate black-box attacks, which are far less effective and efficient than white-box strategies. This is because mobile deep learning frameworks like TFLite do not support gradient computing, which is necessary for white-box attacking algorithms. Thus, we argue that existing findings may underestimate the harmfulness of on-device attacks. To this end, we conduct a study to answer this research question: Can on-device models be directly attacked via white-box strategies? We first systematically analyze the difficulties of transforming the on-device model to its debuggable version, and propose a Reverse Engineering framework for On-device Models (REOM), which automatically reverses the compiled on-device TFLite model to the debuggable model. Specifically, REOM first transforms compiled on-device models into Open Neural Network Exchange format, then removes the non-debuggable parts, and converts them to the debuggable DL models format that allows attackers to exploit in a white-box setting. Our experimental results show that our approach is effective in achieving automated transformation among 244 TFLite models. Compared with previous attacks using surrogate models, REOM enables attackers to achieve higher attack success rates with a hundred times smaller attack perturbations. In addition, because the ONNX platform has plenty of tools for model format exchanging, the proposed method based on the ONNX platform can be adapted to other model formats. Our findings emphasize the need for developers to carefully consider their model deployment strategies, and use white-box methods to evaluate the vulnerability of on-device models.