Machine learning has the potential to revolutionize passive acoustic monitoring (PAM) for ecological assessments. However, high annotation and compute costs limit the field's efficacy. Generalizable pretrained networks can overcome these costs, but high-quality pretraining requires vast annotated libraries, limiting its current applicability primarily to bird taxa. Here, we identify the optimum pretraining strategy for a data-deficient domain using coral reef bioacoustics. We assemble ReefSet, a large annotated library of reef sounds, though modest compared to bird libraries at 2% of the sample count. Through testing few-shot transfer learning performance, we observe that pretraining on bird audio provides notably superior generalizability compared to pretraining on ReefSet or unrelated audio alone. However, our key findings show that cross-domain mixing which leverages bird, reef and unrelated audio during pretraining maximizes reef generalizability. SurfPerch, our pretrained network, provides a strong foundation for automated analysis of marine PAM data with minimal annotation and compute costs.

Biological movement is built up of sub-blocks or motion primitives. Such primitives provide a compact representation of movement which is also desirable in robotic control applications. We analyse handwriting data to gain a better understanding of use of primitives and their timings in biological movements. Inference of the shape and the timing of primitives can be done using a factorial HMM based model, allowing the handwriting to be represented in primitive timing space. This representation provides a distribution of spikes corresponding to the primitive activations, which can also be modelled using HMM architectures. We show how the coupling of the low level primitive model, and the higher level timing model during inference can produce good reconstructions of handwriting, with shared primitives for all characters modelled. This coupled model also captures the variance profile of the dataset which is accounted for by spike timing jitter. The timing code provides a compact representation of the movement while generating a movement without an explicit timing model produces a scribbling style of output.