Webster, Dale
Exploring Large Language Models for Specialist-level Oncology Care
Palepu, Anil, Dhillon, Vikram, Niravath, Polly, Weng, Wei-Hung, Prasad, Preethi, Saab, Khaled, Tanno, Ryutaro, Cheng, Yong, Mai, Hanh, Burns, Ethan, Ajmal, Zainub, Kulkarni, Kavita, Mansfield, Philip, Webster, Dale, Barral, Joelle, Gottweis, Juraj, Schaekermann, Mike, Mahdavi, S. Sara, Natarajan, Vivek, Karthikesalingam, Alan, Tu, Tao
Large language models (LLMs) have shown remarkable progress in encoding clinical knowledge and responding to complex medical queries with appropriate clinical reasoning. However, their applicability in subspecialist or complex medical settings remains underexplored. In this work, we probe the performance of AMIE, a research conversational diagnostic AI system, in the subspecialist domain of breast oncology care without specific fine-tuning to this challenging domain. To perform this evaluation, we curated a set of 50 synthetic breast cancer vignettes representing a range of treatment-naive and treatment-refractory cases and mirroring the key information available to a multidisciplinary tumor board for decision-making (openly released with this work). We developed a detailed clinical rubric for evaluating management plans, including axes such as the quality of case summarization, safety of the proposed care plan, and recommendations for chemotherapy, radiotherapy, surgery and hormonal therapy. To improve performance, we enhanced AMIE with the inference-time ability to perform web search retrieval to gather relevant and up-to-date clinical knowledge and refine its responses with a multi-stage self-critique pipeline. We compare response quality of AMIE with internal medicine trainees, oncology fellows, and general oncology attendings under both automated and specialist clinician evaluations. In our evaluations, AMIE outperformed trainees and fellows demonstrating the potential of the system in this challenging and important domain. We further demonstrate through qualitative examples, how systems such as AMIE might facilitate conversational interactions to assist clinicians in their decision making. However, AMIE's performance was overall inferior to attending oncologists suggesting that further research is needed prior to consideration of prospective uses.
Towards Democratization of Subspeciality Medical Expertise
O'Sullivan, Jack W., Palepu, Anil, Saab, Khaled, Weng, Wei-Hung, Cheng, Yong, Chu, Emily, Desai, Yaanik, Elezaby, Aly, Kim, Daniel Seung, Lan, Roy, Tang, Wilson, Tapaskar, Natalie, Parikh, Victoria, Jain, Sneha S., Kulkarni, Kavita, Mansfield, Philip, Webster, Dale, Gottweis, Juraj, Barral, Joelle, Schaekermann, Mike, Tanno, Ryutaro, Mahdavi, S. Sara, Natarajan, Vivek, Karthikesalingam, Alan, Ashley, Euan, Tu, Tao
The scarcity of subspecialist medical expertise, particularly in rare, complex and life-threatening diseases, poses a significant challenge for healthcare delivery. This issue is particularly acute in cardiology where timely, accurate management determines outcomes. We explored the potential of AMIE (Articulate Medical Intelligence Explorer), a large language model (LLM)-based experimental AI system optimized for diagnostic dialogue, to potentially augment and support clinical decision-making in this challenging context. We curated a real-world dataset of 204 complex cases from a subspecialist cardiology practice, including results for electrocardiograms, echocardiograms, cardiac MRI, genetic tests, and cardiopulmonary stress tests. We developed a ten-domain evaluation rubric used by subspecialists to evaluate the quality of diagnosis and clinical management plans produced by general cardiologists or AMIE, the latter enhanced with web-search and self-critique capabilities. AMIE was rated superior to general cardiologists for 5 of the 10 domains (with preference ranging from 9% to 20%), and equivalent for the rest. Access to AMIE's response improved cardiologists' overall response quality in 63.7% of cases while lowering quality in just 3.4%. Cardiologists' responses with access to AMIE were superior to cardiologist responses without access to AMIE for all 10 domains. Qualitative examinations suggest AMIE and general cardiologist could complement each other, with AMIE thorough and sensitive, while general cardiologist concise and specific. Overall, our results suggest that specialized medical LLMs have the potential to augment general cardiologists' capabilities by bridging gaps in subspecialty expertise, though further research and validation are essential for wide clinical utility.
Capabilities of Gemini Models in Medicine
Saab, Khaled, Tu, Tao, Weng, Wei-Hung, Tanno, Ryutaro, Stutz, David, Wulczyn, Ellery, Zhang, Fan, Strother, Tim, Park, Chunjong, Vedadi, Elahe, Chaves, Juanma Zambrano, Hu, Szu-Yeu, Schaekermann, Mike, Kamath, Aishwarya, Cheng, Yong, Barrett, David G. T., Cheung, Cathy, Mustafa, Basil, Palepu, Anil, McDuff, Daniel, Hou, Le, Golany, Tomer, Liu, Luyang, Alayrac, Jean-baptiste, Houlsby, Neil, Tomasev, Nenad, Freyberg, Jan, Lau, Charles, Kemp, Jonas, Lai, Jeremy, Azizi, Shekoofeh, Kanada, Kimberly, Man, SiWai, Kulkarni, Kavita, Sun, Ruoxi, Shakeri, Siamak, He, Luheng, Caine, Ben, Webson, Albert, Latysheva, Natasha, Johnson, Melvin, Mansfield, Philip, Lu, Jian, Rivlin, Ehud, Anderson, Jesper, Green, Bradley, Wong, Renee, Krause, Jonathan, Shlens, Jonathon, Dominowska, Ewa, Eslami, S. M. Ali, Chou, Katherine, Cui, Claire, Vinyals, Oriol, Kavukcuoglu, Koray, Manyika, James, Dean, Jeff, Hassabis, Demis, Matias, Yossi, Webster, Dale, Barral, Joelle, Corrado, Greg, Semturs, Christopher, Mahdavi, S. Sara, Gottweis, Juraj, Karthikesalingam, Alan, Natarajan, Vivek
Excellence in a wide variety of medical applications poses considerable challenges for AI, requiring advanced reasoning, access to up-to-date medical knowledge and understanding of complex multimodal data. Gemini models, with strong general capabilities in multimodal and long-context reasoning, offer exciting possibilities in medicine. Building on these core strengths of Gemini, we introduce Med-Gemini, a family of highly capable multimodal models that are specialized in medicine with the ability to seamlessly use web search, and that can be efficiently tailored to novel modalities using custom encoders. We evaluate Med-Gemini on 14 medical benchmarks, establishing new state-of-the-art (SoTA) performance on 10 of them, and surpass the GPT-4 model family on every benchmark where a direct comparison is viable, often by a wide margin. On the popular MedQA (USMLE) benchmark, our best-performing Med-Gemini model achieves SoTA performance of 91.1% accuracy, using a novel uncertainty-guided search strategy. On 7 multimodal benchmarks including NEJM Image Challenges and MMMU (health & medicine), Med-Gemini improves over GPT-4V by an average relative margin of 44.5%. We demonstrate the effectiveness of Med-Gemini's long-context capabilities through SoTA performance on a needle-in-a-haystack retrieval task from long de-identified health records and medical video question answering, surpassing prior bespoke methods using only in-context learning. Finally, Med-Gemini's performance suggests real-world utility by surpassing human experts on tasks such as medical text summarization, alongside demonstrations of promising potential for multimodal medical dialogue, medical research and education. Taken together, our results offer compelling evidence for Med-Gemini's potential, although further rigorous evaluation will be crucial before real-world deployment in this safety-critical domain.
Towards Generalist Biomedical AI
Tu, Tao, Azizi, Shekoofeh, Driess, Danny, Schaekermann, Mike, Amin, Mohamed, Chang, Pi-Chuan, Carroll, Andrew, Lau, Chuck, Tanno, Ryutaro, Ktena, Ira, Mustafa, Basil, Chowdhery, Aakanksha, Liu, Yun, Kornblith, Simon, Fleet, David, Mansfield, Philip, Prakash, Sushant, Wong, Renee, Virmani, Sunny, Semturs, Christopher, Mahdavi, S Sara, Green, Bradley, Dominowska, Ewa, Arcas, Blaise Aguera y, Barral, Joelle, Webster, Dale, Corrado, Greg S., Matias, Yossi, Singhal, Karan, Florence, Pete, Karthikesalingam, Alan, Natarajan, Vivek
Medicine is inherently multimodal, with rich data modalities spanning text, imaging, genomics, and more. Generalist biomedical artificial intelligence (AI) systems that flexibly encode, integrate, and interpret this data at scale can potentially enable impactful applications ranging from scientific discovery to care delivery. To enable the development of these models, we first curate MultiMedBench, a new multimodal biomedical benchmark. MultiMedBench encompasses 14 diverse tasks such as medical question answering, mammography and dermatology image interpretation, radiology report generation and summarization, and genomic variant calling. We then introduce Med-PaLM Multimodal (Med-PaLM M), our proof of concept for a generalist biomedical AI system. Med-PaLM M is a large multimodal generative model that flexibly encodes and interprets biomedical data including clinical language, imaging, and genomics with the same set of model weights. Med-PaLM M reaches performance competitive with or exceeding the state of the art on all MultiMedBench tasks, often surpassing specialist models by a wide margin. We also report examples of zero-shot generalization to novel medical concepts and tasks, positive transfer learning across tasks, and emergent zero-shot medical reasoning. To further probe the capabilities and limitations of Med-PaLM M, we conduct a radiologist evaluation of model-generated (and human) chest X-ray reports and observe encouraging performance across model scales. In a side-by-side ranking on 246 retrospective chest X-rays, clinicians express a pairwise preference for Med-PaLM M reports over those produced by radiologists in up to 40.50% of cases, suggesting potential clinical utility. While considerable work is needed to validate these models in real-world use cases, our results represent a milestone towards the development of generalist biomedical AI systems.
Towards Expert-Level Medical Question Answering with Large Language Models
Singhal, Karan, Tu, Tao, Gottweis, Juraj, Sayres, Rory, Wulczyn, Ellery, Hou, Le, Clark, Kevin, Pfohl, Stephen, Cole-Lewis, Heather, Neal, Darlene, Schaekermann, Mike, Wang, Amy, Amin, Mohamed, Lachgar, Sami, Mansfield, Philip, Prakash, Sushant, Green, Bradley, Dominowska, Ewa, Arcas, Blaise Aguera y, Tomasev, Nenad, Liu, Yun, Wong, Renee, Semturs, Christopher, Mahdavi, S. Sara, Barral, Joelle, Webster, Dale, Corrado, Greg S., Matias, Yossi, Azizi, Shekoofeh, Karthikesalingam, Alan, Natarajan, Vivek
Recent artificial intelligence (AI) systems have reached milestones in "grand challenges" ranging from Go to protein-folding. The capability to retrieve medical knowledge, reason over it, and answer medical questions comparably to physicians has long been viewed as one such grand challenge. Large language models (LLMs) have catalyzed significant progress in medical question answering; Med-PaLM was the first model to exceed a "passing" score in US Medical Licensing Examination (USMLE) style questions with a score of 67.2% on the MedQA dataset. However, this and other prior work suggested significant room for improvement, especially when models' answers were compared to clinicians' answers. Here we present Med-PaLM 2, which bridges these gaps by leveraging a combination of base LLM improvements (PaLM 2), medical domain finetuning, and prompting strategies including a novel ensemble refinement approach. Med-PaLM 2 scored up to 86.5% on the MedQA dataset, improving upon Med-PaLM by over 19% and setting a new state-of-the-art. We also observed performance approaching or exceeding state-of-the-art across MedMCQA, PubMedQA, and MMLU clinical topics datasets. We performed detailed human evaluations on long-form questions along multiple axes relevant to clinical applications. In pairwise comparative ranking of 1066 consumer medical questions, physicians preferred Med-PaLM 2 answers to those produced by physicians on eight of nine axes pertaining to clinical utility (p < 0.001). We also observed significant improvements compared to Med-PaLM on every evaluation axis (p < 0.001) on newly introduced datasets of 240 long-form "adversarial" questions to probe LLM limitations. While further studies are necessary to validate the efficacy of these models in real-world settings, these results highlight rapid progress towards physician-level performance in medical question answering.
Large Language Models Encode Clinical Knowledge
Singhal, Karan, Azizi, Shekoofeh, Tu, Tao, Mahdavi, S. Sara, Wei, Jason, Chung, Hyung Won, Scales, Nathan, Tanwani, Ajay, Cole-Lewis, Heather, Pfohl, Stephen, Payne, Perry, Seneviratne, Martin, Gamble, Paul, Kelly, Chris, Scharli, Nathaneal, Chowdhery, Aakanksha, Mansfield, Philip, Arcas, Blaise Aguera y, Webster, Dale, Corrado, Greg S., Matias, Yossi, Chou, Katherine, Gottweis, Juraj, Tomasev, Nenad, Liu, Yun, Rajkomar, Alvin, Barral, Joelle, Semturs, Christopher, Karthikesalingam, Alan, Natarajan, Vivek
Large language models (LLMs) have demonstrated impressive capabilities in natural language understanding and generation, but the quality bar for medical and clinical applications is high. Today, attempts to assess models' clinical knowledge typically rely on automated evaluations on limited benchmarks. There is no standard to evaluate model predictions and reasoning across a breadth of tasks. To address this, we present MultiMedQA, a benchmark combining six existing open question answering datasets spanning professional medical exams, research, and consumer queries; and HealthSearchQA, a new free-response dataset of medical questions searched online. We propose a framework for human evaluation of model answers along multiple axes including factuality, precision, possible harm, and bias. In addition, we evaluate PaLM (a 540-billion parameter LLM) and its instruction-tuned variant, Flan-PaLM, on MultiMedQA. Using a combination of prompting strategies, Flan-PaLM achieves state-of-the-art accuracy on every MultiMedQA multiple-choice dataset (MedQA, MedMCQA, PubMedQA, MMLU clinical topics), including 67.6% accuracy on MedQA (US Medical License Exam questions), surpassing prior state-of-the-art by over 17%. However, human evaluation reveals key gaps in Flan-PaLM responses. To resolve this we introduce instruction prompt tuning, a parameter-efficient approach for aligning LLMs to new domains using a few exemplars. The resulting model, Med-PaLM, performs encouragingly, but remains inferior to clinicians. We show that comprehension, recall of knowledge, and medical reasoning improve with model scale and instruction prompt tuning, suggesting the potential utility of LLMs in medicine. Our human evaluations reveal important limitations of today's models, reinforcing the importance of both evaluation frameworks and method development in creating safe, helpful LLM models for clinical applications.
Massively Multitask Networks for Drug Discovery
Ramsundar, Bharath, Kearnes, Steven, Riley, Patrick, Webster, Dale, Konerding, David, Pande, Vijay
Massively multitask neural architectures provide a learning framework for drug discovery that synthesizes information from many distinct biological sources. To train these architectures at scale, we gather large amounts of data from public sources to create a dataset of nearly 40 million measurements across more than 200 biological targets. We investigate several aspects of the multitask framework by performing a series of empirical studies and obtain some interesting results: (1) massively multitask networks obtain predictive accuracies significantly better than single-task methods, (2) the predictive power of multitask networks improves as additional tasks and data are added, (3) the total amount of data and the total number of tasks both contribute significantly to multitask improvement, and (4) multitask networks afford limited transferability to tasks not in the training set. Our results underscore the need for greater data sharing and further algorithmic innovation to accelerate the drug discovery process.