In the fast-growing field of Remote Sensing (RS) image analysis, the gap between massive unlabeled datasets and the ability to fully utilize these datasets for advanced RS analytics presents a significant challenge. To fill the gap, our work introduces an innovative auto-labeling framework named ALPS (Automatic Labeling for Pre-training in Segmentation), leveraging the Segment Anything Model (SAM) to predict precise pseudo-labels for RS images without necessitating prior annotations or additional prompts. The proposed pipeline significantly reduces the labor and resource demands traditionally associated with annotating RS datasets. By constructing two comprehensive pseudo-labeled RS datasets via ALPS for pre-training purposes, our approach enhances the performance of downstream tasks across various benchmarks, including iSAID and ISPRS Potsdam. Experiments demonstrate the effectiveness of our framework, showcasing its ability to generalize well across multiple tasks even under the scarcity of extensively annotated datasets, offering a scalable solution to automatic segmentation and annotation challenges in the field. In addition, the proposed a pipeline is flexible and can be applied to medical image segmentation, remarkably boosting the performance. Note that ALPS utilizes pre-trained SAM to semi-automatically annotate RS images without additional manual annotations. Though every component in the pipeline has bee well explored, integrating clustering algorithms with SAM and novel pseudo-label alignment significantly enhances RS segmentation, as an off-the-shelf tool for pre-training data preparation. Our source code is available at: https://github.com/StriveZs/ALPS.

While pre-training on object detection tasks, such as Common Objects in Contexts (COCO) [1], could significantly boost the performance of cell segmentation, it still consumes on massive fine-annotated cell images [2] with bounding boxes, masks, and cell types for every cell in every image, to fine-tune the pre-trained model. To lower the cost of annotation, this work considers the problem of pre-training DNN models for few-shot cell segmentation, where massive unlabeled cell images are available but only a small proportion is annotated. Hereby, we propose Cross-domain Unsupervised Pre-training, namely CUPre, transferring the capability of object detection and instance segmentation for common visual objects (learned from COCO) to the visual domain of cells using unlabeled images. Given a standard COCO pre-trained network with backbone, neck, and head modules, CUPre adopts an alternate multi-task pre-training (AMT2) procedure with two sub-tasks -- in every iteration of pre-training, AMT2 first trains the backbone with cell images from multiple cell datasets via unsupervised momentum contrastive learning (MoCo) [3], and then trains the whole model with vanilla COCO datasets via instance segmentation. After pre-training, CUPre fine-tunes the whole model on the cell segmentation task using a few annotated images. We carry out extensive experiments to evaluate CUPre using LIVECell [2] and BBBC038 [4] datasets in few-shot instance segmentation settings. The experiment shows that CUPre can outperform existing pre-training methods, achieving the highest average precision (AP) for few-shot cell segmentation and detection.

While self-supervised learning (SSL) algorithms have been widely used to pre-train deep models, few efforts [11] have been done to improve representation learning of X-ray image analysis with SSL pre-trained models. In this work, we study a novel self-supervised pre-training pipeline, namely Multi-task Self-super-vised Continual Learning (MUSCLE), for multiple medical imaging tasks, such as classification and segmentation, using X-ray images collected from multiple body parts, including heads, lungs, and bones. Specifically, MUSCLE aggregates X-rays collected from multiple body parts for MoCo-based representation learning, and adopts a well-designed continual learning (CL) procedure to further pre-train the backbone subject various X-ray analysis tasks jointly. Certain strategies for image pre-processing, learning schedules, and regularization have been used to solve data heterogeneity, overfitting, and catastrophic forgetting problems for multi-task/dataset learning in MUSCLE.We evaluate MUSCLE using 9 real-world X-ray datasets with various tasks, including pneumonia classification, skeletal abnormality classification, lung segmentation, and tuberculosis (TB) detection. Comparisons against other pre-trained models [7] confirm the proof-of-concept that self-supervised multi-task/dataset continual pre-training could boost the performance of X-ray image analysis.

To address the problem of medical image recognition, computer vision techniques like convolutional neural networks (CNN) are frequently used. Recently, 3D CNN-based models dominate the field of magnetic resonance image (MRI) analytics. Due to the high similarity between MRI data and videos, we conduct extensive empirical studies on video recognition techniques for MRI classification to answer the questions: (1) can we directly use video recognition models for MRI classification, (2) which model is more appropriate for MRI, (3) are the common tricks like data augmentation in video recognition still useful for MRI classification? Our work suggests that advanced video techniques benefit MRI classification. In this paper, four datasets of Alzheimer's and Parkinson's disease recognition are utilized in experiments, together with three alternative video recognition models and data augmentation techniques that are frequently applied to video tasks. In terms of efficiency, the results reveal that the video framework performs better than 3D-CNN models by 5% - 11% with 50% - 66% less trainable parameters. This report pushes forward the potential fusion of 3D medical imaging and video understanding research.

In this paper, we present a medical AttentIon Denoising Super Resolution Generative Adversarial Network (AID-SRGAN) for diographic image super-resolution. First, we present a medical practical degradation model that considers various degradation factors beyond downsampling. To the best of our knowledge, this is the first composite degradation model proposed for radiographic images. Furthermore, we propose AID-SRGAN, which can simultaneously denoise and generate high-resolution (HR) radiographs. In this model, we introduce an attention mechanism into the denoising module to make it more robust to complicated degradation. Finally, the SR module reconstructs the HR radiographs using the "clean" low-resolution (LR) radiographs. In addition, we propose a separate-joint training approach to train the model, and extensive experiments are conducted to show that the proposed method is superior to its counterparts.

While deep learning (DL) is data-hungry and usually relies on extensive labeled data to deliver good performance, Active Learning (AL) reduces labeling costs by selecting a small proportion of samples from unlabeled data for labeling and training. Therefore, Deep Active Learning (DAL) has risen as a feasible solution for maximizing model performance under a limited labeling cost/budget in recent years. Although abundant methods of DAL have been developed and various literature reviews conducted, the performance evaluation of DAL methods under fair comparison settings is not yet available. Our work intends to fill this gap. In this work, We construct a DAL toolkit, DeepAL+, by re-implementing 19 highly-cited DAL methods. We survey and categorize DAL-related works and construct comparative experiments across frequently used datasets and DAL algorithms. Additionally, we explore some factors (e.g., batch size, number of epochs in the training process) that influence the efficacy of DAL, which provides better references for researchers to design their DAL experiments or carry out DAL-related applications.

Image super-resolution is important in many fields, such as surveillance and remote sensing. However, infrared (IR) images normally have low resolution since the optical equipment is relatively expensive. Recently, deep learning methods have dominated image super-resolution and achieved remarkable performance on visible images; however, IR images have received less attention. IR images have fewer patterns, and hence, it is difficult for deep neural networks (DNNs) to learn diverse features from IR images. In this paper, we present a framework that employs heterogeneous convolution and adversarial training, namely, heterogeneous kernel-based super-resolution Wasserstein GAN (HetSRW-GAN), for IR image super-resolution. The HetSRWGAN algorithm is a lightweight GAN architecture that applies a plug-and-play heterogeneous kernel-based residual block. Moreover, a novel loss function that employs image gradients is adopted, which can be applied to an arbitrary model. The proposed HetSRWGAN achieves consistently better performance in both qualitative and quantitative evaluations. According to the experimental results, the whole training process is more stable.

Attention modules connecting encoder and decoders have been widely applied in the field of object recognition, image captioning, visual question answering and neural machine translation, and significantly improves the performance. In this paper, we propose a bottom-up gated hierarchical attention (GHA) mechanism for image captioning. Our proposed model employs a CNN as the decoder which is able to learn different concepts at different layers, and apparently, different concepts correspond to different areas of an image. Therefore, we develop the GHA in which low-level concepts are merged into high-level concepts and simultaneously low-level attended features pass to the top to make predictions. Our GHA significantly improves the performance of the model that only applies one level attention, for example, the CIDEr score increases from 0.923 to 0.999, which is comparable to the state-of-the-art models that employ attributes boosting and reinforcement learning (RL). We also conduct extensive experiments to analyze the CNN decoder and our proposed GHA, and we find that deeper decoders cannot obtain better performance, and when the convolutional decoder becomes deeper the model is likely to collapse during training.