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Collaborating Authors

 Thureau, Sébastien


AutoPETIII: The Tracer Frontier. What Frontier?

arXiv.org Artificial Intelligence

For the last three years, the AutoPET competition gathered the medical imaging community around a hot topic: lesion segmentation on Positron Emitting Tomography (PET) scans. Each year a different aspect of the problem is presented; in 2024 the multiplicity of existing and used tracers was at the core of the challenge. Specifically, this year's edition aims to develop a fully automatic algorithm capable of performing lesion segmentation on a PET/CT scan, without knowing the tracer, which can either be a FDG or PSMA-based tracer. In this paper we describe how we used the nnUNetv2[1] framework to train two sets of 6 fold ensembles of models to perform fully automatic PET/CT lesion segmentation as well as a MIP-CNN to choose which set of models to use for segmentation.


Prediction of brain tumor recurrence location based on multi-modal fusion and nonlinear correlation learning

arXiv.org Artificial Intelligence

Brain tumor is one of the leading causes of cancer death. The high-grade brain tumors are easier to recurrent even after standard treatment. Therefore, developing a method to predict brain tumor recurrence location plays an important role in the treatment planning and it can potentially prolong patient's survival time. There is still little work to deal with this issue. In this paper, we present a deep learning-based brain tumor recurrence location prediction network. Since the dataset is usually small, we propose to use transfer learning to improve the prediction. We first train a multi-modal brain tumor segmentation network on the public dataset BraTS 2021. Then, the pre-trained encoder is transferred to our private dataset for extracting the rich semantic features. Following that, a multi-scale multi-channel feature fusion model and a nonlinear correlation learning module are developed to learn the effective features. The correlation between multi-channel features is modeled by a nonlinear equation. To measure the similarity between the distributions of original features of one modality and the estimated correlated features of another modality, we propose to use Kullback-Leibler divergence. Based on this divergence, a correlation loss function is designed to maximize the similarity between the two feature distributions. Finally, two decoders are constructed to jointly segment the present brain tumor and predict its future tumor recurrence location. To the best of our knowledge, this is the first work that can segment the present tumor and at the same time predict future tumor recurrence location, making the treatment planning more efficient and precise. The experimental results demonstrated the effectiveness of our proposed method to predict the brain tumor recurrence location from the limited dataset.