Brain-computer interfaces (BCIs) are an advanced fusion of neuroscience and artificial intelligence, requiring stable and long-term decoding of neural signals. Spiking Neural Networks (SNNs), with their neuronal dynamics and spike-based signal processing, are inherently well-suited for this task. This paper presents a novel approach utilizing a Multiscale Fusion enhanced Spiking Neural Network (MFSNN). The MFSNN emulates the parallel processing and multiscale feature fusion seen in human visual perception to enable real-time, efficient, and energy-conserving neural signal decoding. Initially, the MFSNN employs temporal convolutional networks and channel attention mechanisms to extract spatiotemporal features from raw data. It then enhances decoding performance by integrating these features through skip connections. Additionally, the MFSNN improves generalizability and robustness in cross-day signal decoding through mini-batch supervised generalization learning. In two benchmark invasive BCI paradigms, including the single-hand grasp-and-touch and center-and-out reach tasks, the MFSNN surpasses traditional artificial neural network methods, such as MLP and GRU, in both accuracy and computational efficiency. Moreover, the MFSNN's multiscale feature fusion framework is well-suited for the implementation on neuromorphic chips, offering an energy-efficient solution for online decoding of invasive BCI signals.

Pretraining plays a pivotal role in acquiring generalized knowledge from large-scale data, achieving remarkable successes as evidenced by large models in CV and NLP. However, progress in the graph domain remains limited due to fundamental challenges such as feature heterogeneity and structural heterogeneity. Recently, increasing efforts have been made to enhance node feature quality with Large Language Models (LLMs) on text-attributed graphs (TAGs), demonstrating superiority to traditional bag-of-words or word2vec techniques. These high-quality node features reduce the previously critical role of graph structure, resulting in a modest performance gap between Graph Neural Networks (GNNs) and structure-agnostic Multi-Layer Perceptrons (MLPs). Motivated by this, we introduce a feature-centric pretraining perspective by treating graph structure as a prior and leveraging the rich, unified feature space to learn refined interaction patterns that generalizes across graphs. Our framework, Graph Sequence Pretraining with Transformer (GSPT), samples node contexts through random walks and employs masked feature reconstruction to capture pairwise proximity in the LLM-unified feature space using a standard Transformer. By utilizing unified text representations rather than varying structures, our framework achieves significantly better transferability among graphs within the same domain. GSPT can be easily adapted to both node classification and link prediction, demonstrating promising empirical success on various datasets.

Given the ubiquity of graph data and its applications in diverse domains, building a Graph Foundation Model (GFM) that can work well across different graphs and tasks with a unified backbone has recently garnered significant interests. A major obstacle to achieving this goal stems from the fact that graphs from different domains often exhibit diverse node features. Inspired by multi-modal models that align different modalities with natural language, the text has recently been adopted to provide a unified feature space for diverse graphs. Despite the great potential of these text-space GFMs, current research in this field is hampered by two problems. First, the absence of a comprehensive benchmark with unified problem settings hinders a clear understanding of the comparative effectiveness and practical value of different text-space GFMs. Second, there is a lack of sufficient datasets to thoroughly explore the methods' full potential and verify their effectiveness across diverse settings. To address these issues, we conduct a comprehensive benchmark providing novel text-space datasets and comprehensive evaluation under unified problem settings. Empirical results provide new insights and inspire future research directions. Our code and data are publicly available from \url{https://github.com/CurryTang/TSGFM}.

Large models have demonstrated exceptional generalization capabilities in computer vision and natural language processing. Recent efforts have focused on enhancing these models with multimodal processing abilities. However, addressing the challenges posed by scenarios where one modality is absent remains a significant hurdle. In response to this issue, we propose a robust latent representation tuning method for large models. Specifically, our approach introduces a modality latent translation module to maximize the correlation between modalities, resulting in a robust representation. Following this, a newly designed fusion module is employed to facilitate information interaction between the modalities. Within this framework, common semantics are refined during training, and robust performance is achieved even in the absence of one modality. Importantly, our method maintains the frozen state of the image and text foundation models to preserve their capabilities acquired through large-scale pretraining. We conduct experiments on several public datasets, and the results underscore the effectiveness of our proposed method.

Graphs play an important role in representing complex relationships in various domains like social networks, knowledge graphs, and molecular discovery. With the advent of deep learning, Graph Neural Networks (GNNs) have emerged as a cornerstone in Graph Machine Learning (Graph ML), facilitating the representation and processing of graph structures. Recently, LLMs have demonstrated unprecedented capabilities in language tasks and are widely adopted in a variety of applications such as computer vision and recommender systems. This remarkable success has also attracted interest in applying LLMs to the graph domain. Increasing efforts have been made to explore the potential of LLMs in advancing Graph ML's generalization, transferability, and few-shot learning ability. Meanwhile, graphs, especially knowledge graphs, are rich in reliable factual knowledge, which can be utilized to enhance the reasoning capabilities of LLMs and potentially alleviate their limitations such as hallucinations and the lack of explainability. Given the rapid progress of this research direction, a systematic review summarizing the latest advancements for Graph ML in the era of LLMs is necessary to provide an in-depth understanding to researchers and practitioners. Therefore, in this survey, we first review the recent developments in Graph ML. We then explore how LLMs can be utilized to enhance the quality of graph features, alleviate the reliance on labeled data, and address challenges such as graph heterogeneity and out-of-distribution (OOD) generalization. Afterward, we delve into how graphs can enhance LLMs, highlighting their abilities to enhance LLM pre-training and inference. Furthermore, we investigate various applications and discuss the potential future directions in this promising field.

The exponential growth of astronomical datasets provides an unprecedented opportunity for humans to gain insight into the Universe. However, effectively analyzing this vast amount of data poses a significant challenge. Astronomers are turning to deep learning techniques to address this, but the methods are limited by their specific training sets, leading to considerable duplicate workloads too. Hence, as an example to present how to overcome the issue, we built a framework for general analysis of galaxy images, based on a large vision model (LVM) plus downstream tasks (DST), including galaxy morphological classification, image restoration, object detection, parameter extraction, and more. Considering the low signal-to-noise ratio of galaxy images and the imbalanced distribution of galaxy categories, we have incorporated a Human-in-the-loop (HITL) module into our large vision model, which leverages human knowledge to enhance the reliability and interpretability of processing galaxy images interactively. The proposed framework exhibits notable few-shot learning capabilities and versatile adaptability to all the abovementioned tasks on galaxy images in the DESI legacy imaging surveys. Expressly, for object detection, trained by 1000 data points, our DST upon the LVM achieves an accuracy of 96.7%, while ResNet50 plus Mask R-CNN gives an accuracy of 93.1%; for morphology classification, to obtain AUC ~0.9, LVM plus DST and HITL only requests 1/50 training sets compared to ResNet18. Expectedly, multimodal data can be integrated similarly, which opens up possibilities for conducting joint analyses with datasets spanning diverse domains in the era of multi-message astronomy.

Continual learning, involving sequential training on diverse tasks, often faces catastrophic forgetting. While knowledge distillation-based approaches exhibit notable success in preventing forgetting, we pinpoint a limitation in their ability to distill the cumulative knowledge of all the previous tasks. To remedy this, we propose Dense Knowledge Distillation (DKD). DKD uses a task pool to track the model's capabilities. It partitions the output logits of the model into dense groups, each corresponding to a task in the task pool. It then distills all tasks' knowledge using all groups. However, using all the groups can be computationally expensive, we also suggest random group selection in each optimization step. Moreover, we propose an adaptive weighting scheme, which balances the learning of new classes and the retention of old classes, based on the count and similarity of the classes. Our DKD outperforms recent state-of-the-art baselines across diverse benchmarks and scenarios. Empirical analysis underscores DKD's ability to enhance model stability, promote flatter minima for improved generalization, and remains robust across various memory budgets and task orders. Moreover, it seamlessly integrates with other CL methods to boost performance and proves versatile in offline scenarios like model compression.

We propose an instruction-based process for trustworthy data curation in materials science (MatSci-Instruct), which we then apply to finetune a LLaMa-based language model targeted for materials science (HoneyBee). MatSci-Instruct helps alleviate the scarcity of relevant, high-quality materials science textual data available in the open literature, and HoneyBee is the first billion-parameter language model specialized to materials science. In MatSci-Instruct we improve the trustworthiness of generated data by prompting multiple commercially available large language models for generation with an Instructor module (e.g. Chat-GPT) and verification from an independent Verifier module (e.g. Claude). Using MatSci-Instruct, we construct a dataset of multiple tasks and measure the quality of our dataset along multiple dimensions, including accuracy against known facts, relevance to materials science, as well as completeness and reasonableness of the data. Moreover, we iteratively generate more targeted instructions and instruction-data in a finetuning-evaluation-feedback loop leading to progressively better performance for our finetuned HoneyBee models. Our evaluation on the MatSci-NLP benchmark shows HoneyBee's outperformance of existing language models on materials science tasks and iterative improvement in successive stages of instruction-data refinement. We study the quality of HoneyBee's language modeling through automatic evaluation and analyze case studies to further understand the model's capabilities and limitations. Our code and relevant datasets are publicly available at \url{https://github.com/BangLab-UdeM-Mila/NLP4MatSci-HoneyBee}.

Graph Neural Networks (GNNs) are state-of-the-art models for performing prediction tasks on graphs. While existing GNNs have shown great performance on various tasks related to graphs, little attention has been paid to the scenario where out-of-distribution (OOD) nodes exist in the graph during training and inference. Borrowing the concept from CV and NLP, we define OOD nodes as nodes with labels unseen from the training set. Since a lot of networks are automatically constructed by programs, real-world graphs are often noisy and may contain nodes from unknown distributions. In this work, we define the problem of graph learning with out-of-distribution nodes. Specifically, we aim to accomplish two tasks: 1) detect nodes which do not belong to the known distribution and 2) classify the remaining nodes to be one of the known classes. We demonstrate that the connection patterns in graphs are informative for outlier detection, and propose Out-of-Distribution Graph Attention Network (OODGAT), a novel GNN model which explicitly models the interaction between different kinds of nodes and separate inliers from outliers during feature propagation. Extensive experiments show that OODGAT outperforms existing outlier detection methods by a large margin, while being better or comparable in terms of in-distribution classification.

We present MatSci-NLP, a natural language benchmark for evaluating the performance of natural language processing (NLP) models on materials science text. We construct the benchmark from publicly available materials science text data to encompass seven different NLP tasks, including conventional NLP tasks like named entity recognition and relation classification, as well as NLP tasks specific to materials science, such as synthesis action retrieval which relates to creating synthesis procedures for materials. We study various BERT-based models pretrained on different scientific text corpora on MatSci-NLP to understand the impact of pretraining strategies on understanding materials science text. Given the scarcity of high-quality annotated data in the materials science domain, we perform our fine-tuning experiments with limited training data to encourage the generalize across MatSci-NLP tasks. Our experiments in this low-resource training setting show that language models pretrained on scientific text outperform BERT trained on general text. MatBERT, a model pretrained specifically on materials science journals, generally performs best for most tasks. Moreover, we propose a unified text-to-schema for multitask learning on \benchmark and compare its performance with traditional fine-tuning methods. In our analysis of different training methods, we find that our proposed text-to-schema methods inspired by question-answering consistently outperform single and multitask NLP fine-tuning methods. The code and datasets are publicly available at \url{https://github.com/BangLab-UdeM-Mila/NLP4MatSci-ACL23}.