Protein-based therapeutics play a pivotal role in modern medicine targeting various diseases. Despite their therapeutic importance, these products can aggregate and form subvisible particles (SvPs), which can compromise their efficacy and trigger immunological responses, emphasizing the critical need for robust monitoring techniques. Flow Imaging Microscopy (FIM) has been a significant advancement in detecting SvPs, evolving from monochrome to more recently incorporating color imaging. Complementing SvP images obtained via FIM, deep learning techniques have recently been employed successfully for stress source identification of monochrome SvPs. In this study, we explore the potential of color FIM to enhance the characterization of stress sources in SvPs. To achieve this, we curate a new dataset comprising 16,000 SvPs from eight commercial monoclonal antibodies subjected to heat and mechanical stress. Using both supervised and self-supervised convolutional neural networks, as well as vision transformers in large-scale experiments, we demonstrate that deep learning with color FIM images consistently outperforms monochrome images, thus highlighting the potential of color FIM in stress source classification compared to its monochrome counterparts.

Generative artificial intelligence (AI) technology is revolutionizing the computing industry. Not only its applications have broadened to various sectors but also poses new system design and optimization opportunities. The technology is capable of understanding and responding in multiple modalities. However, the advanced capability currently comes with significant system resource demands. To sustainably scale generative AI capabilities to billions of users in the world, inference must be fast and efficient. This paper pinpoints key system design and optimization opportunities by characterizing a family of emerging multi-modal generation models on real systems. Auto-regressive token generation is a critical latency performance bottleneck, typically dominated by GPU idle time. In addition to memory-intensive attention across the generative AI models, linear operations constitute significant inference latency due to the feed forward networks in Transformer-based models. We demonstrate that state-of-the-art optimization levers, spanning from applications to system software and hardware, set a 3.88x better baseline.

Training large-scale machine learning models poses distinct system challenges, given both the size and complexity of today's workloads. Recently, many organizations training state-of-the-art Generative AI models have reported cases of instability during training, often taking the form of loss spikes. Numeric deviation has emerged as a potential cause of this training instability, although quantifying this is especially challenging given the costly nature of training runs. In this work, we develop a principled approach to understanding the effects of numeric deviation, and construct proxies to put observations into context when downstream effects are difficult to quantify. As a case study, we apply this framework to analyze the widely-adopted Flash Attention optimization. We find that Flash Attention sees roughly an order of magnitude more numeric deviation as compared to Baseline Attention at BF16 when measured during an isolated forward pass. We then use a data-driven analysis based on the Wasserstein Distance to provide upper bounds on how this numeric deviation impacts model weights during training, finding that the numerical deviation present in Flash Attention is 2-5 times less significant than low-precision training.

Large Language Models (LLMs) with hundreds of billions of parameters have transformed the field of machine learning. However, serving these models at inference time is both compute and memory intensive, where a single request can require multiple GPUs and tens of Gigabytes of memory. Multi-Head Attention is one of the key components of LLMs, which can account for over 50% of LLMs memory and compute requirement. We observe that there is a high amount of redundancy across heads on which tokens they pay attention to. Based on this insight, we propose Clustered Head Attention (CHAI). CHAI combines heads with a high amount of correlation for self-attention at runtime, thus reducing both memory and compute. In our experiments, we show that CHAI is able to reduce the memory requirements for storing K,V cache by up to 21.4% and inference time latency by up to 1.73x without any fine-tuning required. CHAI achieves this with a maximum 3.2% deviation in accuracy across 3 different models (i.e. OPT-66B, LLAMA-7B, LLAMA-33B) and 5 different evaluation datasets.

As the development of large-scale Generative AI models evolve beyond text (1D) generation to include image (2D) and video (3D) generation, processing spatial and temporal information presents unique challenges to quality, performance, and efficiency. We present the first work towards understanding this new system design space for multi-modal text-to-image (TTI) and text-to-video (TTV) generation models. Current model architecture designs are bifurcated into 2 categories: Diffusion- and Transformer-based models. Our systematic performance characterization on a suite of eight representative TTI/TTV models shows that after state-of-the-art optimization techniques such as Flash Attention are applied, Convolution accounts for up to 44% of execution time for Diffusion-based TTI models, while Linear layers consume up to 49% of execution time for Transformer-based models. We additionally observe that Diffusion-based TTI models resemble the Prefill stage of LLM inference, and benefit from 1.1-2.5x greater speedup from Flash Attention than Transformer-based TTI models that resemble the Decode phase. Since optimizations designed for LLMs do not map directly onto TTI/TTV models, we must conduct a thorough characterization of these workloads to gain insights for new optimization opportunities. In doing so, we define sequence length in the context of TTI/TTV models and observe sequence length can vary up to 4x in Diffusion model inference. We additionally observe temporal aspects of TTV workloads pose unique system bottlenecks, with Temporal Attention accounting for over 60% of total Attention time. Overall, our in-depth system performance characterization is a critical first step towards designing efficient and deployable systems for emerging TTI/TTV workloads.

Recently, source-free unsupervised domain adaptation (SFUDA) has emerged as a more practical and feasible approach compared to unsupervised domain adaptation (UDA) which assumes that labeled source data are always accessible. However, significant limitations associated with SFUDA approaches are often overlooked, which limits their practicality in real-world applications. These limitations include a lack of principled ways to determine optimal hyperparameters and performance degradation when the unlabeled target data fail to meet certain requirements such as a closed-set and identical label distribution to the source data. All these limitations stem from the fact that SFUDA entirely relies on unlabeled target data. We empirically demonstrate the limitations of existing SFUDA methods in real-world scenarios including out-of-distribution and label distribution shifts in target data, and verify that none of these methods can be safely applied to real-world settings. Based on our experimental results, we claim that fine-tuning a source pretrained model with a few labeled data (e.g., 1- or 3-shot) is a practical and reliable solution to circumvent the limitations of SFUDA. Contrary to common belief, we find that carefully fine-tuned models do not suffer from overfitting even when trained with only a few labeled data, and also show little change in performance due to sampling bias. Our experimental results on various domain adaptation benchmarks demonstrate that the few-shot fine-tuning approach performs comparatively under the standard SFUDA settings, and outperforms comparison methods under realistic scenarios. Our code is available at https://github.com/daintlab/fewshot-SFDA .