Large Language Models (LLMs) are increasingly being used to automate programming tasks. Yet, LLMs' capabilities in reasoning about program semantics are still inadequately studied, leaving significant potential for further exploration. This paper introduces FormalBench, a comprehensive benchmark designed to evaluate LLMs' reasoning abilities on program semantics, particularly via the task of synthesizing formal program specifications to assist verifying program correctness. This task requires both comprehensive reasoning over all possible program executions and the generation of precise, syntactically correct expressions that adhere to formal syntax and semantics. Using this benchmark, we evaluated the ability of LLMs in synthesizing consistent and complete specifications. Our findings show that LLMs perform well with simple control flows but struggle with more complex structures, especially loops, even with advanced prompting. Additionally, LLMs exhibit limited robustness against semantic-preserving transformations. We also highlight common failure patterns and design self-repair prompts, improving success rates by 25%.

In this paper, we propose shifting the focus of robustness evaluation for Neural Program Repair (NPR) techniques toward naturally-occurring data transformations. To accomplish this, we first examine the naturalness of semantic-preserving transformations through a two-stage human study. This study includes (1) interviews with senior software developers to establish concrete criteria for evaluating the naturalness of these transformations, and (2) a survey involving 10 developers to assess the naturalness of 1,178 transformations, i.e., pairs of original and transformed programs, applied to 225 real-world bugs. Our findings show that only 60% of these transformations are deemed natural, while 20% are considered unnatural, with strong agreement among annotators. Moreover, the unnaturalness of these transformations significantly impacts both their applicability to benchmarks and the conclusions drawn from robustness testing. Next, we conduct natural robustness testing on NPR techniques to assess their true effectiveness against real-world data variations. Our experimental results reveal a substantial number of prediction changes in NPR techniques, leading to significant reductions in both plausible and correct patch rates when comparing performance on the original and transformed datasets. Additionally, we observe notable differences in performance improvements between NPR techniques, suggesting potential biases on NPR evaluation introduced by limited datasets. Finally, we propose an LLM-based metric to automate the assessment of transformation naturalness, ensuring the scalability of natural robustness testing.

In this paper, we first show that increases in beam size of even just small-sized LLM (1B-7B parameters) require an extensive GPU resource consumption, leading to up to 80% of recurring crashes due to memory overloads in LLM-based APR. Seemingly simple solutions to reduce memory consumption are (1) to quantize LLM models, i.e., converting the weights of a LLM from high-precision values to lower-precision ones. and (2) to make beam search sequential, i.e., forwarding each beam through the model sequentially and then concatenate them back into a single model output. However, we show that these approaches still do not work via both theoretical analysis and experiments. To address this, we introduce FLAMES, a novel LLM-based APR technique that employs semantic-guided patch generation to enhance repair effectiveness and memory efficiency. Unlike conventional methods that rely on beam search, FLAMES utilizes greedy decoding to enhance memory efficiency while steering the search to more potentially good repair candidates via a semantic-guided best-first search algorithm. At each decoding step, FLAMES uses semantic feedback from test validation such as the number of passing and failing test cases to select the most promising token to explore further. Our empirical evaluation on the Defects4J and HumanEval-Java datasets shows that FLAMES not only substantially reduces memory consumption by up to 83% compared to conventional LLM-based APR, but also accelerates the repair process. Remarkably, FLAMES successfully generated 133 and 103 correct fixes for 333 and 163 bugs in the Defects4J and HumanEval-Java datasets, respectively. This suggests that FLAMES is not only more efficient but also outperforms state-of-the-art techniques, fixing at least 10 and 11 more bugs than SOTA baselines in the Defects4J and HumanEval-Java datasets, respectively.

Businesses need to query visually rich documents (VRDs) like receipts, medical records, and insurance forms to make decisions. Existing techniques for extracting entities from VRDs struggle with new layouts or require extensive pre-training data. We introduce VRDSynth, a program synthesis method to automatically extract entity relations from multilingual VRDs without pre-training data. To capture the complexity of VRD domain, we design a domain-specific language (DSL) to capture spatial and textual relations to describe the synthesized programs. Along with this, we also derive a new synthesis algorithm utilizing frequent spatial relations, search space pruning, and a combination of positive, negative, and exclusive programs to improve coverage. We evaluate VRDSynth on the FUNSD and XFUND benchmarks for semantic entity linking, consisting of 1,592 forms in 8 languages. VRDSynth outperforms state-of-the-art pre-trained models (LayoutXLM, InfoXLMBase, and XLMRobertaBase) in 5, 6, and 7 out of 8 languages, respectively, improving the F1 score by 42% over LayoutXLM in English. To test the extensibility of the model, we further improve VRDSynth with automated table recognition, creating VRDSynth(Table), and compare it with extended versions of the pre-trained models, InfoXLM(Large) and XLMRoberta(Large). VRDSynth(Table) outperforms these baselines in 4 out of 8 languages and in average F1 score. VRDSynth also significantly reduces memory footprint (1M and 380MB vs. 1.48GB and 3GB for LayoutXLM) while maintaining similar time efficiency.

Open-source development has revolutionized the software industry by promoting collaboration, transparency, and community-driven innovation. Today, a vast amount of various kinds of open-source software, which form networks of repositories, is often hosted on GitHub - a popular software development platform. To enhance the discoverability of the repository networks, i.e., groups of similar repositories, GitHub introduced repository topics in 2017 that enable users to more easily explore relevant projects by type, technology, and more. It is thus crucial to accurately assign topics for each GitHub repository. Current methods for automatic topic recommendation rely heavily on TF-IDF for encoding textual data, presenting challenges in understanding semantic nuances. This paper addresses the limitations of existing techniques by proposing Legion, a novel approach that leverages Pre-trained Language Models (PTMs) for recommending topics for GitHub repositories. The key novelty of Legion is three-fold. First, Legion leverages the extensive capabilities of PTMs in language understanding to capture contextual information and semantic meaning in GitHub repositories. Second, Legion overcomes the challenge of long-tailed distribution, which results in a bias toward popular topics in PTMs, by proposing a Distribution-Balanced Loss (DB Loss) to better train the PTMs. Third, Legion employs a filter to eliminate vague recommendations, thereby improving the precision of PTMs. Our empirical evaluation on a benchmark dataset of real-world GitHub repositories shows that Legion can improve vanilla PTMs by up to 26% on recommending GitHubs topics. Legion also can suggest GitHub topics more precisely and effectively than the state-of-the-art baseline with an average improvement of 20% and 5% in terms of Precision and F1-score, respectively.

We propose GNNInfer, the first automatic property inference technique for GNNs. To tackle the challenge of varying input structures in GNNs, GNNInfer first identifies a set of representative influential structures that contribute significantly towards the prediction of a GNN. Using these structures, GNNInfer converts each pair of an influential structure and the GNN to their equivalent FNN and then leverages existing property inference techniques to effectively capture properties of the GNN that are specific to the influential structures. GNNINfer then generalizes the captured properties to any input graphs that contain the influential structures. Finally, GNNInfer improves the correctness of the inferred properties by building a model (either a decision tree or linear regression) that estimates the deviation of GNN output from the inferred properties given full input graphs. The learned model helps GNNInfer extend the inferred properties with constraints to the input and output of the GNN, obtaining stronger properties that hold on full input graphs. Our experiments show that GNNInfer is effective in inferring likely properties of popular real-world GNNs, and more importantly, these inferred properties help effectively defend against GNNs' backdoor attacks. In particular, out of the 13 ground truth properties, GNNInfer re-discovered 8 correct properties and discovered likely correct properties that approximate the remaining 5 ground truth properties. Using properties inferred by GNNInfer to defend against the state-of-the-art backdoor attack technique on GNNs, namely UGBA, experiments show that GNNInfer's defense success rate is up to 30 times better than existing baselines.