Models for human choice prediction in preference learning and psychophysics often consider only binary response data, requiring many samples to accurately learn preferences or perceptual detection thresholds. The response time (RT) to make each choice captures additional information about the decision process, however existing models incorporating RTs for choice prediction do so in fully parametric settings or over discrete stimulus sets. This is in part because the de-facto standard model for choice RTs, the diffusion decision model (DDM), does not admit tractable, differentiable inference. The DDM thus cannot be easily integrated with flexible models for continuous, multivariate function approximation, particularly Gaussian process (GP) models. We propose a novel differentiable approximation to the DDM likelihood using a family of known, skewed three-parameter distributions. We then use this new likelihood to incorporate RTs into GP models for binary choices. Our RT-choice GPs enable both better latent value estimation and held-out choice prediction relative to baselines, which we demonstrate on three real-world multivariate datasets covering both human psychophysics and preference learning applications.

A large body of recent work focuses on methods for extracting low-dimensional latent structure from multi-neuron spike train data. Most such methods employ either linear latent dynamics or linear mappings from latent space to log spike rates. Here we propose a doubly nonlinear latent variable model that can identify low-dimensional structure underlying apparently high-dimensional spike train data. We introduce the Poisson Gaussian-Process Latent Variable Model (P-GPLVM), which consists of Poisson spiking observations and two underlying Gaussian processes—one governing a temporal latent variable and another governing a set of nonlinear tuning curves. The use of nonlinear tuning curves enables discovery of low-dimensional latent structure even when spike responses exhibit high linear dimensionality (e.g., as found in hippocampal place cell codes). To learn the model from data, we introduce the decoupled Laplace approximation, a fast approximate inference method that allows us to efficiently optimize the latent path while marginalizing over tuning curves. We show that this method outperforms previous Laplace-approximation-based inference methods in both the speed of convergence and accuracy. We apply the model to spike trains recorded from hippocampal place cells and show that it compares favorably to a variety of previous methods for latent structure discovery, including variational auto-encoder (VAE) based methods that parametrize the nonlinear mapping from latent space to spike rates with a deep neural network.