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Collaborating Authors

 Giles, C. Lee


Do Large Multimodal Models Solve Caption Generation for Scientific Figures? Lessons Learned from SciCap Challenge 2023

arXiv.org Artificial Intelligence

Since the SciCap datasets launch in 2021, the research community has made significant progress in generating captions for scientific figures in scholarly articles. In 2023, the first SciCap Challenge took place, inviting global teams to use an expanded SciCap dataset to develop models for captioning diverse figure types across various academic fields. At the same time, text generation models advanced quickly, with many powerful pre-trained large multimodal models (LMMs) emerging that showed impressive capabilities in various vision-and-language tasks. This paper presents an overview of the first SciCap Challenge and details the performance of various models on its data, capturing a snapshot of the fields state. We found that professional editors overwhelmingly preferred figure captions generated by GPT-4V over those from all other models and even the original captions written by authors. Following this key finding, we conducted detailed analyses to answer this question: Have advanced LMMs solved the task of generating captions for scientific figures?


Scaling Automatic Extraction of Pseudocode

arXiv.org Artificial Intelligence

Pseudocode in a scholarly paper provides a concise way to express the algorithms implemented therein. Pseudocode can also be thought of as an intermediary representation that helps bridge the gap between programming languages and natural languages. Having access to a large collection of pseudocode can provide various benefits ranging from enhancing algorithmic understanding, facilitating further algorithmic design, to empowering NLP or computer vision based models for tasks such as automated code generation and optical character recognition (OCR). We have created a large pseudocode collection by extracting nearly 320,000 pseudocode examples from arXiv papers. This process involved scanning over $2.2$ million scholarly papers, with 1,000 of them being manually inspected and labeled. Our approach encompasses an extraction mechanism tailored to optimize the coverage and a validation mechanism based on random sampling to check its accuracy and reliability, given the inherent heterogeneity of the collection. In addition, we offer insights into common pseudocode structures, supported by clustering and statistical analyses. Notably, these analyses indicate an exponential-like growth in the usage of pseudocodes, highlighting their increasing significance.


Investigating Symbolic Capabilities of Large Language Models

arXiv.org Artificial Intelligence

Prompting techniques have significantly enhanced the capabilities of Large Language Models (LLMs) across various complex tasks, including reasoning, planning, and solving math word problems. However, most research has predominantly focused on language-based reasoning and word problems, often overlooking the potential of LLMs in handling symbol-based calculations and reasoning. This study aims to bridge this gap by rigorously evaluating LLMs on a series of symbolic tasks, such as addition, multiplication, modulus arithmetic, numerical precision, and symbolic counting. Our analysis encompasses eight LLMs, including four enterprise-grade and four open-source models, of which three have been pre-trained on mathematical tasks. The assessment framework is anchored in Chomsky's Hierarchy, providing a robust measure of the computational abilities of these models. The evaluation employs minimally explained prompts alongside the zero-shot Chain of Thoughts technique, allowing models to navigate the solution process autonomously. The findings reveal a significant decline in LLMs' performance on context-free and context-sensitive symbolic tasks as the complexity, represented by the number of symbols, increases. Notably, even the fine-tuned GPT3.5 exhibits only marginal improvements, mirroring the performance trends observed in other models. Across the board, all models demonstrated a limited generalization ability on these symbol-intensive tasks. This research underscores LLMs' challenges with increasing symbolic complexity and highlights the need for specialized training, memory and architectural adjustments to enhance their proficiency in symbol-based reasoning tasks.


SciCapenter: Supporting Caption Composition for Scientific Figures with Machine-Generated Captions and Ratings

arXiv.org Artificial Intelligence

Crafting effective captions for figures is important. Readers heavily depend on these captions to grasp the figure's message. However, despite a well-developed set of AI technologies for figures and captions, these have rarely been tested for usefulness in aiding caption writing. This paper introduces SciCapenter, an interactive system that puts together cutting-edge AI technologies for scientific figure captions to aid caption composition. SciCapenter generates a variety of captions for each figure in a scholarly article, providing scores and a comprehensive checklist to assess caption quality across multiple critical aspects, such as helpfulness, OCR mention, key takeaways, and visual properties reference. Users can directly edit captions in SciCapenter, resubmit for revised evaluations, and iteratively refine them. A user study with Ph.D. students indicates that SciCapenter significantly lowers the cognitive load of caption writing. Participants' feedback further offers valuable design insights for future systems aiming to enhance caption writing.


Stability Analysis of Various Symbolic Rule Extraction Methods from Recurrent Neural Network

arXiv.org Artificial Intelligence

This paper analyzes two competing rule extraction methodologies: quantization and equivalence query. We trained $3600$ RNN models, extracting $18000$ DFA with a quantization approach (k-means and SOM) and $3600$ DFA by equivalence query($L^{*}$) methods across $10$ initialization seeds. We sampled the datasets from $7$ Tomita and $4$ Dyck grammars and trained them on $4$ RNN cells: LSTM, GRU, O2RNN, and MIRNN. The observations from our experiments establish the superior performance of O2RNN and quantization-based rule extraction over others. $L^{*}$, primarily proposed for regular grammars, performs similarly to quantization methods for Tomita languages when neural networks are perfectly trained. However, for partially trained RNNs, $L^{*}$ shows instability in the number of states in DFA, e.g., for Tomita 5 and Tomita 6 languages, $L^{*}$ produced more than $100$ states. In contrast, quantization methods result in rules with number of states very close to ground truth DFA. Among RNN cells, O2RNN produces stable DFA consistently compared to other cells. For Dyck Languages, we observe that although GRU outperforms other RNNs in network performance, the DFA extracted by O2RNN has higher performance and better stability. The stability is computed as the standard deviation of accuracy on test sets on networks trained across $10$ seeds. On Dyck Languages, quantization methods outperformed $L^{*}$ with better stability in accuracy and the number of states. $L^{*}$ often showed instability in accuracy in the order of $16\% - 22\%$ for GRU and MIRNN while deviation for quantization methods varied in $5\% - 15\%$. In many instances with LSTM and GRU, DFA's extracted by $L^{*}$ even failed to beat chance accuracy ($50\%$), while those extracted by quantization method had standard deviation in the $7\%-17\%$ range. For O2RNN, both rule extraction methods had deviation in the $0.5\% - 3\%$ range.


GPT-4 as an Effective Zero-Shot Evaluator for Scientific Figure Captions

arXiv.org Artificial Intelligence

There is growing interest in systems that generate captions for scientific figures. However, assessing these systems output poses a significant challenge. Human evaluation requires academic expertise and is costly, while automatic evaluation depends on often low-quality author-written captions. This paper investigates using large language models (LLMs) as a cost-effective, reference-free method for evaluating figure captions. We first constructed SCICAP-EVAL, a human evaluation dataset that contains human judgments for 3,600 scientific figure captions, both original and machine-made, for 600 arXiv figures. We then prompted LLMs like GPT-4 and GPT-3 to score (1-6) each caption based on its potential to aid reader understanding, given relevant context such as figure-mentioning paragraphs. Results show that GPT-4, used as a zero-shot evaluator, outperformed all other models and even surpassed assessments made by Computer Science and Informatics undergraduates, achieving a Kendall correlation score of 0.401 with Ph.D. students rankings


A prototype hybrid prediction market for estimating replicability of published work

arXiv.org Artificial Intelligence

We present a prototype hybrid prediction market and demonstrate the avenue it represents for meaningful human-AI collaboration. We build on prior work proposing artificial prediction markets as a novel machine-learning algorithm. In an artificial prediction market, trained AI agents buy and sell outcomes of future events. Classification decisions can be framed as outcomes of future events, and accordingly, the price of an asset corresponding to a given classification outcome can be taken as a proxy for the confidence of the system in that decision. By embedding human participants in these markets alongside bot traders, we can bring together insights from both. In this paper, we detail pilot studies with prototype hybrid markets for the prediction of replication study outcomes. We highlight challenges and opportunities, share insights from semi-structured interviews with hybrid market participants, and outline a vision for ongoing and future work.


ACL-Fig: A Dataset for Scientific Figure Classification

arXiv.org Artificial Intelligence

Most existing large-scale academic search engines are built to retrieve text-based information. However, there are no large-scale retrieval services for scientific figures and tables. One challenge for such services is understanding scientific figures' semantics, such as their types and purposes. A key obstacle is the need for datasets containing annotated scientific figures and tables, which can then be used for classification, question-answering, and auto-captioning. Here, we develop a pipeline that extracts figures and tables from the scientific literature and a deep-learning-based framework that classifies scientific figures using visual features. Using this pipeline, we built the first large-scale automatically annotated corpus, ACL-Fig, consisting of 112,052 scientific figures extracted from ~56K research papers in the ACL Anthology. The ACL-Fig-Pilot dataset contains 1,671 manually labeled scientific figures belonging to 19 categories. The dataset is accessible at https://huggingface.co/datasets/citeseerx/ACL-fig under a CC BY-NC license.


A Synthetic Prediction Market for Estimating Confidence in Published Work

arXiv.org Artificial Intelligence

Explainably estimating confidence in published scholarly work offers opportunity for faster and more robust scientific progress. We develop a synthetic prediction market to assess the credibility of published claims in the social and behavioral sciences literature. We demonstrate our system and detail our findings using a collection of known replication projects. We suggest that this work lays the foundation for a research agenda that creatively uses AI for peer review.


SciCap: Generating Captions for Scientific Figures

arXiv.org Artificial Intelligence

Researchers use figures to communicate rich, complex information in scientific papers. The captions of these figures are critical to conveying effective messages. However, low-quality figure captions commonly occur in scientific articles and may decrease understanding. In this paper, we propose an end-to-end neural framework to automatically generate informative, high-quality captions for scientific figures. To this end, we introduce SCICAP, a large-scale figure-caption dataset based on computer science arXiv papers published between 2010 and 2020. After pre-processing - including figure-type classification, sub-figure identification, text normalization, and caption text selection - SCICAP contained more than two million figures extracted from over 290,000 papers. We then established baseline models that caption graph plots, the dominant (19.2%) figure type. The experimental results showed both opportunities and steep challenges of generating captions for scientific figures.