Gao, Zhiqiang
ContraNovo: A Contrastive Learning Approach to Enhance De Novo Peptide Sequencing
Jin, Zhi, Xu, Sheng, Zhang, Xiang, Ling, Tianze, Dong, Nanqing, Ouyang, Wanli, Gao, Zhiqiang, Chang, Cheng, Sun, Siqi
De novo peptide sequencing from mass spectrometry (MS) data is a critical task in proteomics research. Traditional de novo algorithms have encountered a bottleneck in accuracy due to the inherent complexity of proteomics data. While deep learning-based methods have shown progress, they reduce the problem to a translation task, potentially overlooking critical nuances between spectra and peptides. In our research, we present ContraNovo, a pioneering algorithm that leverages contrastive learning to extract the relationship between spectra and peptides and incorporates the mass information into peptide decoding, aiming to address these intricacies more efficiently. Through rigorous evaluations on two benchmark datasets, ContraNovo consistently outshines contemporary state-of-the-art solutions, underscoring its promising potential in enhancing de novo peptide sequencing.
An AI-based, Multi-stage detection system of banking botnets
Ling, Li, Gao, Zhiqiang, Silas, Michael A, Lee, Ian, Doeuff, Erwan A Le
Banking Trojans, botnets are primary drivers of financially-motivated cybercrime. In this paper, we first analyzed how an APT-based banking botnet works step by step through the whole lifecycle. Specifically, we present a multi-stage system that detects malicious banking botnet activities which potentially target the organizations. The system leverages Cyber Data Lake as well as multiple artificial intelligence techniques at different stages. The evaluation results using public datasets showed that Deep Learning based detections were highly successful compared with baseline models. The proposed detections are partially in production on Cyber Data Lake within the organization, and we are continuing to work with internal security teams on further operational challenges.
Improving Opinion Aspect Extraction Using Semantic Similarity and Aspect Associations
Liu, Qian (Southeast University) | Liu, Bing (University of Illinois at Chicago) | Zhang, Yuanlin (Texas Tech University) | Kim, Doo Soon (Bosch Research Lab) | Gao, Zhiqiang (Southeast University)
Aspect extraction is a key task of fine-grained opinion mining. Although it has been studied by many researchers, it remains to be highly challenging. This paper proposes a novel unsupervised approach to make a major improvement. The approach is based on the framework of lifelong learning and is implemented with two forms of recommendations that are based on semantic similarity and aspect associations respectively. Experimental results using eight review datasets show the effectiveness of the proposed approach.